{"database": "scout", "table": "aptamer_costructures", "is_view": false, "human_description_en": "", "rows": [[1, "484D", "SOLUTION STRUCTURE OF HIV-1 REV PEPTIDE-RNA APTAMER COMPLEX", "HIV-1 REV PEPTIDE; RNA APTAMER; BOUND PEPTIDE SECONDARY STRUCTURE, PEPTIDE- BINDING RNA, TERTIARY ARCHITECTURES, ADAPTIVE-BINDING, RNA BINDING PROTEIN-RNA COMPLEX", "", "", "", "SOLUTION NMR"], [2, "9I0V", "Crystal structure of DasR in complex with a synthetic DasR-binding RNA aptamer", "Bacterial repressor GntR-HutC family member Synthetic RNA aptamer SELEX-derived aptamer, RNA BINDING PROTEIN", "2.02", "", "", "X-RAY DIFFRACTION"], [3, "1EXY", "SOLUTION STRUCTURE OF HTLV-1 PEPTIDE BOUND TO ITS RNA APTAMER TARGET", "arginine-guanine sandwich, extended bound basic Rex peptide, flap base, junctional base triplets, RNA binding pocket architecture, RNA BINDING PROTEIN-RNA COMPLEX", "", "", "", "SOLUTION NMR"], [4, "4PDB", "CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER", "PROTEIN-RNA COMPLEX SELEX BASE TRIPLE TRANSLATION, RIBOSOMAL PROTEIN-RNA complex", "2.6", "", "", "X-RAY DIFFRACTION"], [5, "6SY4", "TetR in complex with the TetR-binding RNA-aptamer K1", "TetR, Complex, Aptamer, Transcriptional regulator, DNA BINDING PROTEIN", "2.695", "", "", "X-RAY DIFFRACTION"], [6, "3HXO", "Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding", "ARC1779, VWF, Platelet Glycoprotein Ib, Aptamer, ARC1772, Blood coagulation, Cell adhesion, Cleavage on pair of basic residues, Disease mutation, Disulfide bond, Extracellular matrix, Glycoprotein, Hemostasis, Isopeptide bond, Secreted, von Willebrand disease, BLOOD CLOTTING-BLOOD CLOTTING REGULATOR COMPLEX", "2.4", "", "", "X-RAY DIFFRACTION"], [7, "3HXQ", "Crystal Structure of Von Willebrand Factor (VWF) A1 Domain in Complex with DNA Aptamer ARC1172, an Inhibitor of VWF-Platelet Binding", "ARC1779, VWF, Platelet Glycoprotein Ib, Aptamer, ARC1772, Blood coagulation, Cell adhesion, Cleavage on pair of basic residues, Disease mutation, Disulfide bond, Extracellular matrix, Glycoprotein, Hemostasis, Isopeptide bond, Secreted, von Willebrand disease, BLOOD CLOTTING-BLOOD CLOTTING REGULATOR COMPLEX", "2.694", "", "", "X-RAY DIFFRACTION"], [8, "6TXR", "Structural insights into cubane-modified aptamer recognition of a malaria biomarker", "Aptamer, Cubamer, PvLDH, DNA", "2.5", "", "", "X-RAY DIFFRACTION"], [9, "3EGZ", "Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch", "tetracycline, aptamer, riboswitch, antibiotic, RNA", "2.2", "", "", "X-RAY DIFFRACTION"], [10, "1ULL", "RNA APTAMER COMPLEXED WITH HIV-1 REV PEPTIDE, NMR, 7 STRUCTURES", "REV PEPTIDE-RNA RECOGNITION, ALPHA-HELIX IN WIDENED RNA MAJOR GROOVE, PURINE-PURINE MISMATCHES, UAU BASE TRIPLE, ADAPTIVE BINDING OF PEPTIDE AND RNA IN COMPLEX, COMPLEX (RNA APTAMER-REV PEPTIDE), Viral protein-RNA COMPLEX", "", "", "", "SOLUTION NMR"], [11, "2RSK", "RNA aptamer against prion protein in complex with the partial binding peptide", "Aptamer, Prion, RNA, Alzheimer's disease, Membrane Protein-RNA complex", "", "", "", "SOLUTION NMR"], [12, "2RU7", "Refined structure of RNA aptamer in complex with the partial binding peptide of prion protein", "Aptamer, Prion, RNA, Alzheimer's disease, Membrane protein-RNA complex", "", "", "", "SOLUTION NMR"], [13, "9GXH", "Nanobody bound to TBA G-quadruplex", "G-quadruplex, DNA, thrombin, nanobody, thrombin-binding aptamer, TBA, IMMUNE SYSTEM", "1.9", "", "", "X-RAY DIFFRACTION"], [14, "6DB9", "Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer", "Fluorescent aptamer, Fab, DIR, RNA, RNA-Immune System complex", "2.025", "", "", "X-RAY DIFFRACTION"], [15, "6DB8", "Structural basis for promiscuous binding and activation of fluorogenic dyes by DIR2s RNA aptamer", "Fluorescent aptamer, Fab, DIR, RNA, RNA-IMMUNE SYSTEM complex", "1.86541345549", "", "", "X-RAY DIFFRACTION"], [16, "3ZH2", "Structure of Plasmodium falciparum lactate dehydrogenase in complex with a DNA aptamer", "OXIDOREDUCTASE", "2.1", "", "", "X-RAY DIFFRACTION"], [17, "5HTO", "Crystal structure of Plasmodium Vivax LDH in complex with a DNA aptamer called pL1 (tetrameric LDH in an asymmetric unit)", "LDH, malaria, DNA aptamer, aptamer, structural element, OXIDOREDUCTASE-DNA complex", "1.9", "", "", "X-RAY DIFFRACTION"], [18, "4M6D", "Crystal structure of the aptamer minF-lysozyme complex.", "STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, Hydrolase-RNA complex", "2.68", "", "", "X-RAY DIFFRACTION"], [19, "4Q9Q", "Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab", "G-quadruplex, Fluorescence, Fluorophore, RNA", "2.45", "", "", "X-RAY DIFFRACTION"], [20, "4Q9R", "Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with Fab", "G-quadruplex, Fluorescence, Fluorophore, RNA-immune system complex", "3.12", "", "", "X-RAY DIFFRACTION"], [21, "5HRU", "Crystal structure of Plasmodium vivax LDH in complex with a DNA aptamer called pL1", "DNA aptamer, Plasmodium LDH, malaria, DNA structural element, OXIDOREDUCTASE-DNA complex", "1.71", "", "", "X-RAY DIFFRACTION"], [22, "7SZU", "Crystal structure of Pepper RNA aptamer in complex with HBC ligand and Fab BL3-6", "fluorogenic, IMMUNE SYSTEM-RNA complex", "2.24", "", "", "X-RAY DIFFRACTION"], [23, "1EXD", "CRYSTAL STRUCTURE OF A TIGHT-BINDING GLUTAMINE TRNA BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE", "engineered tRNA, tRNA-protein complex, tRNA aptamer, ligase-RNA COMPLEX", "2.7", "", "", "X-RAY DIFFRACTION"], [24, "6MSF", "F6 APTAMER MS2 COAT PROTEIN COMPLEX", "VIRAL COAT PROTEIN-RNA COMPLEX, RNA APTAMER, RNA STEM LOOP, BACTERIOPHAGE MS2, Icosahedral virus, Virus-RNA COMPLEX", "2.8", "", "", "X-RAY DIFFRACTION"], [25, "7U0Y", "Crystal structure of Pepper RNA aptamer in complex with HBC599 ligand and Fab BL3-6", "fluorogenic RNA, antibody, RNA, IMMUNE SYSTEM-RNA complex", "2.66", "", "", "X-RAY DIFFRACTION"], [26, "6SY6", "TetR in complex with the TetR-binding RNA-aptamer K2", "TetR, transcription regulator, aptamer, RNA, DNA BINDING PROTEIN", "2.9", "", "", "X-RAY DIFFRACTION"], [27, "8TFD", "Crystal structure of a stem-loop DNA aptamer complexed with SARS-CoV-2 nucleocapsid protein RNA-binding domain", "DNA binding protein, endonuclease, replication, viral protein", "1.55", "", "", "X-RAY DIFFRACTION"], [28, "3AHU", "Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer.", "Sm-like motif, Protein-RNA complex, TRANSLATION-RNA complex", "2.2", "", "", "X-RAY DIFFRACTION"], [29, "3HSB", "Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer", "Sm-like motif, Protein-RNA complex, RNA-binding, Stress response, RNA BINDING PROTEIN-RNA COMPLEX", "2.2", "", "", "X-RAY DIFFRACTION"], [30, "3V7E", "Crystal structure of YbxF bound to the SAM-I riboswitch aptamer", "RNA-protein complex, riboswitch, K-turn, L7Ae-like, A member of the L7Ae/L30e superfamily, Unknown function, K-turn motif, RIBOSOMAL PROTEIN-RNA complex", "2.8", "", "", "X-RAY DIFFRACTION"], [31, "5VOE", "DesGla-XaS195A Bound to Aptamer 11F7t", "Serine Protease, Blood Coagulation, Aptamer, Inhibitor, HYDROLASE-RNA complex", "2.0", "", "", "X-RAY DIFFRACTION"], [32, "5MSF", "MS2 PROTEIN CAPSID/RNA COMPLEX", "CAPSID PROTEIN MS2-RNA APTAMER COMPLEX, RNA-PROTEIN COMPLEX, RNA STEM LOOP, BACTERIOPHAGE MS2, Icosahedral virus, Virus-RNA COMPLEX", "2.8", "", "", "X-RAY DIFFRACTION"], [33, "7MSF", "MS2 PROTEIN CAPSID/RNA COMPLEX", "CCAPSID PROTEIN MS2-RNA APTAMER COMPLEX, RNA-PROTEIN COMPLEX, RNA STEM LOOP, BACTERIOPHAGE MS2, Icosahedral virus, Virus-RNA COMPLEX", "2.8", "", "", "X-RAY DIFFRACTION"], [34, "6CF2", "Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex", "HIV-1, Rev, RNA aptamer, RNA BINDING PROTEIN-RNA complex", "3.0", "", "", "X-RAY DIFFRACTION"], [35, "3UZT", "Structure of the C13.18 RNA Aptamer in Complex with G Protein-Coupled Receptor Kinase 2", "Protein-RNA complex, Protein Kinase Fold, RGS Homology Domain, Pleckstrin Homology Domain, G Protein-Coupled Receptor Phosphorylation, RNA Aptamer, TRANSFERASE-RNA complex", "3.51", "", "", "X-RAY DIFFRACTION"], [36, "4M4O", "Crystal structure of the aptamer minE-lysozyme complex", "STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, protein-RNA complex, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE-RNA complex", "2.0", "", "", "X-RAY DIFFRACTION"], [37, "8ZBF", "Crystal structure of the A58-T10 DNA aptamer in complex with SARS-CoV-2 N-NTD", "aptamer, A58, nucleocapsid protein, SARS-CoV-2, DNA", "2.8", "", "", "X-RAY DIFFRACTION"], [38, "4WB2", "Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a complement anaphylatoxin", "protein-RNA complex, mirror-image aptamer, G-quadruplex, complement anaphylatoxin, DNA-RNA hybrid", "1.8", "", "", "X-RAY DIFFRACTION"], [39, "4WB3", "Crystal structure of the mirror-image L-RNA/L-DNA aptamer NOX-D20 in complex with mouse C5a-desArg complement anaphylatoxin", "protein-RNA complex, mirror-image aptamer, G-quadruplex, complement anaphylatoxin, DNA-RNA hybrid", "2.0", "", "", "X-RAY DIFFRACTION"], [40, "7V5N", "Crystal structure of Fab fragment of bevacizumab bound to DNA aptamer", "antibody, DNA complex, DNA BINDING PROTEIN, IMMUNE SYSTEM-DNA complex", "1.7", "", "", "X-RAY DIFFRACTION"], [41, "6B14", "Crystal structure of Spinach RNA aptamer in complex with Fab BL3-6S97N", "Spinach RNA aptamer, Antibody engineering, Chaperone-assisted RNA crystallography, immune system-rna complex", "1.64", "", "", "X-RAY DIFFRACTION"], [42, "7F49", "von Willebrand factor (VWF) A1 domain with BT-100 aptamer RNA", "aptamers, arterial thrombosis, platelets, primates, von Willebrand factor, BLOOD CLOTTING", "2.09", "", "", "X-RAY DIFFRACTION"], [43, "7YQ6", "human insulin receptor bound with A62 DNA aptamer", "receptor-ligand complex_C, STRUCTURAL PROTEIN", "4.18", "", "", "ELECTRON MICROSCOPY"], [44, "6B3K", "Crystal structure of mutant Spinach RNA aptamer in complex with Fab BL3-6", "RNA aptamer, Fragment of antibody, Chaperone-assisted RNA Crystallography, immune system-rna complex", "2.09", "", "", "X-RAY DIFFRACTION"], [45, "8DK7", "Crystal structure of theophylline aptamer soaked with TAL2", "RNA, aptamer, theophylline, RNA-IMMUNE SYSTEM complex", "2.46", "", "", "X-RAY DIFFRACTION"], [46, "8EPK", "Complex of anticoagulant RNA aptamer and human coagulation factor IXa (S195A)", "coagulation factor IX, RNA aptamer, inhibitor, BLOOD CLOTTING", "2.65", "", "", "X-RAY DIFFRACTION"], [47, "3UCU", "The c-di-GMP-I riboswitch bound to pGpG", "riboswitch, SIGNALING PROTEIN-RNA complex", "2.8", "", "", "X-RAY DIFFRACTION"], [48, "3UCZ", "The c-di-GMP-I riboswitch bound to GpG", "riboswitch, SIGNALING PROTEIN-RNA complex", "2.8", "", "", "X-RAY DIFFRACTION"], [49, "3UD3", "The C92U mutant c-di-GMP-I riboswitch bound to pGpA", "riboswitch, SIGNALING PROTEIN-RNA complex", "3.1", "", "", "X-RAY DIFFRACTION"], [50, "3UD4", "The C92U mutant c-di-GMP-I riboswitch bound to GpA", "riboswitch, SIGNALING PROTEIN-RNA complex", "2.7", "", "", "X-RAY DIFFRACTION"]], "truncated": false, "filtered_table_rows_count": 114, "expanded_columns": [], "expandable_columns": [], "columns": ["rowid", "pdb_id", "title", "keywords", "resolution_A", "pmid", "doi", "experimental_method"], "primary_keys": [], "units": {}, "query": {"sql": "select rowid, pdb_id, title, keywords, resolution_A, pmid, doi, experimental_method from aptamer_costructures order by rowid limit 51", "params": {}}, "facet_results": {}, "suggested_facets": [{"name": "experimental_method", "toggle_url": "https://apt-scout.org/scout/aptamer_costructures.json?_facet=experimental_method"}], "next": "50", 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