{"database": "scout", "table": "target_layer1_structure", "rows": [["A0A5B9", 62, 30, null, 94.0, 1, 0, 0, 1, 0, "{\"pdb\": {\"uniprot_id\": \"A0A5B9\", \"pdb_count_total\": 62, \"pdb_count_detailed\": 30, \"entries\": [{\"pdb_id\": \"1BD2\", \"title\": \"COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC CLASS I MOLECULE HLA-A 0201\", \"keywords\": \"COMPLEX (MHC/VIRAL PEPTIDE/RECEPTOR)\", \"resolution\": 2.5, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"1998-05-12T00:00:00.000+00:00\", \"release_date\": \"1998-08-19T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"5\", \"chains\": [\"E\"], \"description\": \"T CELL RECEPTOR BETA\", \"length\": 244}], \"ligands\": [], \"primary_citation\": {\"title\": \"Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids.\", \"doi\": null, \"pmid\": null, \"journal\": \"Immunity\", \"year\": 1998, \"authors\": [\"Ding, Y.H.\", \"Smith, K.J.\", \"Garboczi, D.N.\", \"Utz, U.\", \"Biddison, W.E.\", \"Wiley, D.C.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"2EYR\", \"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.4, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2005-11-09T00:00:00.000+00:00\", \"release_date\": \"2006-03-21T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"NKT12\", \"length\": 241}], \"ligands\": [], \"primary_citation\": {\"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"doi\": null, \"pmid\": null, \"journal\": \"J Exp Medicine\", \"year\": 2006, \"authors\": [\"Kjer-Nielsen, L.\", \"Borg, N.A.\", \"Pellicci, D.G.\", \"Beddoe, T.\", \"Kostenko, L.\", \"Clements, C.S.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"2EYS\", \"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.21, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2005-11-09T00:00:00.000+00:00\", \"release_date\": \"2006-03-21T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"NKT15\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"ACETIC ACID\", \"chem_id\": \"ACY\"}], \"primary_citation\": {\"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"doi\": null, \"pmid\": null, \"journal\": \"J Exp Medicine\", \"year\": 2006, \"authors\": [\"Kjer-Nielsen, L.\", \"Borg, N.A.\", \"Pellicci, D.G.\", \"Beddoe, T.\", \"Kostenko, L.\", \"Clements, C.S.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"2EYT\", \"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.6, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2005-11-09T00:00:00.000+00:00\", \"release_date\": \"2006-03-21T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\", \"D\"], \"description\": \"NKT15\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition\", \"doi\": null, \"pmid\": null, \"journal\": \"J Exp Medicine\", \"year\": 2006, \"authors\": [\"Kjer-Nielsen, L.\", \"Borg, N.A.\", \"Pellicci, D.G.\", \"Beddoe, T.\", \"Kostenko, L.\", \"Clements, C.S.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3KXF\", \"title\": \"Crystal Structure of SB27 TCR in complex with the 'restriction triad' mutant HLA-B*3508-13mer\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.1, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2009-12-03T00:00:00.000+00:00\", \"release_date\": \"2010-06-09T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"E\", \"H\", \"O\", \"P\"], \"description\": \"SB27 T cell receptor beta chain\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"IODIDE ION\", \"chem_id\": \"IOD\"}], \"primary_citation\": {\"title\": \"Hard wiring of T cell receptor specificity for the major histocompatibility complex is underpinned by TCR adaptability\", \"doi\": null, \"pmid\": null, \"journal\": \"Proc Natl Acad Sci U S A\", \"year\": 2010, \"authors\": [\"Burrows, S.R.\", \"Chen, Z.\", \"Archbold, J.K.\", \"Tynan, F.E.\", \"Beddoe, T.\", \"Kjer-Nielsen, L.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3O6F\", \"title\": \"Crystal structure of a human autoimmune TCR MS2-3C8 bound to MHC class II self-ligand MBP/HLA-DR4\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.8, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2010-07-29T00:00:00.000+00:00\", \"release_date\": \"2011-03-02T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"T-cell receptor beta-1 chain C region\", \"length\": 245}], \"ligands\": [], \"primary_citation\": {\"title\": \"Structure of a TCR with high affinity for self-antigen reveals basis for escape from negative selection.\", \"doi\": null, \"pmid\": null, \"journal\": \"EMBO J\", \"year\": 2011, \"authors\": [\"Yin, Y.\", \"Li, Y.\", \"Kerzic, M.C.\", \"Martin, R.\", \"Mariuzza, R.A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3O8X\", \"title\": \"Recognition of Glycolipid Antigen by iNKT Cell TCR\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.74, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2010-08-03T00:00:00.000+00:00\", \"release_date\": \"2010-09-29T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"Vbeta8.2 chimera (Mouse variable domain, Human T-cell receptor beta-2 chain C region constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"(2S,3R)-3-HYDROXY-2-(TETRADECANOYLAMINO)OCTADECYL ALPHA-D-GALACTOPYRANOSIDURONIC\", \"chem_id\": \"GSL\"}, {\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}], \"primary_citation\": {\"title\": \"The V alpha 14 invariant natural killer T cell TCR forces microbial glycolipids and CD1d into a conserved binding mode.\", \"doi\": null, \"pmid\": null, \"journal\": \"J Exp Medicine\", \"year\": 2010, \"authors\": [\"Li, Y.\", \"Girardi, E.\", \"Wang, J.\", \"Yu, E.D.\", \"Painter, G.F.\", \"Kronenberg, M.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3O9W\", \"title\": \"Recognition of a Glycolipid Antigen by the iNKT Cell TCR\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.8, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2010-08-04T00:00:00.000+00:00\", \"release_date\": \"2010-09-29T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"Vbeta8.2 chimera (Mouse variable domain, Human T-cell receptor beta-2 chain C region constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-en\", \"chem_id\": \"1O2\"}], \"primary_citation\": {\"title\": \"The V alpha 14 invariant natural killer T cell TCR forces microbial glycolipids and CD1d into a conserved binding mode.\", \"doi\": null, \"pmid\": null, \"journal\": \"J Exp Medicine\", \"year\": 2010, \"authors\": [\"Li, Y.\", \"Girardi, E.\", \"Wang, J.\", \"Yu, E.D.\", \"Painter, G.F.\", \"Kronenberg, M.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3QUX\", \"title\": \"Structure of the mouse CD1d-alpha-C-GalCer-iNKT TCR complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.91, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2011-02-24T00:00:00.000+00:00\", \"release_date\": \"2011-06-29T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"Vbeta8.2 (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"N-[(3S,4S,5R)-4,5-dihydroxy-1-[(2R,3R,4R,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethy\", \"chem_id\": \"QUX\"}], \"primary_citation\": {\"title\": \"Galactose-modified iNKT cell agonists stabilized by an induced fit of CD1d prevent tumour metastasis.\", \"doi\": null, \"pmid\": null, \"journal\": \"EMBO J\", \"year\": 2011, \"authors\": [\"Aspeslagh, S.\", \"Li, Y.\", \"Yu, E.D.\", \"Pauwels, N.\", \"Trappeniers, M.\", \"Girardi, E.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3T0E\", \"title\": \"Crystal structure of a complete ternary complex of T cell receptor, peptide-MHC and CD4\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 4.0, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2011-07-20T00:00:00.000+00:00\", \"release_date\": \"2012-03-07T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"T-cell receptor beta chain\", \"length\": 245}], \"ligands\": [], \"primary_citation\": {\"title\": \"Crystal structure of a complete ternary complex of T-cell receptor, peptide-MHC, and CD4.\", \"doi\": null, \"pmid\": null, \"journal\": \"Proc Natl Acad Sci U S A\", \"year\": 2012, \"authors\": [\"Yin, Y.\", \"Wang, X.X.\", \"Mariuzza, R.A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3TA3\", \"title\": \"Structure of the mouse CD1d-Glc-DAG-s2-iNKT TCR complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.7, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2011-08-03T00:00:00.000+00:00\", \"release_date\": \"2011-11-23T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"Vbeta8.2 chimera (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(2S)-1-(alpha-D-glucopyranosyloxy)-3-(hexadecanoyloxy)propan-2-yl (11Z)-octadec-\", \"chem_id\": \"3TF\"}], \"primary_citation\": {\"title\": \"Unique Interplay between Sugar and Lipid in Determining the Antigenic Potency of Bacterial Antigens for NKT Cells.\", \"doi\": null, \"pmid\": null, \"journal\": \"PLoS Biol\", \"year\": 2011, \"authors\": [\"Girardi, E.\", \"Yu, E.D.\", \"Li, Y.\", \"Tarumoto, N.\", \"Pei, B.\", \"Wang, J.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"3TVM\", \"title\": \"Structure of the mouse CD1d-SMC124-iNKT TCR complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.8, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2011-09-20T00:00:00.000+00:00\", \"release_date\": \"2012-02-01T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"Vbeta8.2 (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"N-[(2S,3R)-10-[(1R,2R)-2-decylcyclopropyl]-1-(alpha-D-galactopyranosyloxy)-3-hyd\", \"chem_id\": \"07P\"}, {\"comp_id\": \"CHLORIDE ION\", \"chem_id\": \"CL\"}, {\"comp_id\": \"GLYCEROL\", \"chem_id\": \"GOL\"}], \"primary_citation\": {\"title\": \"Glycolipids that Elicit IFN-gama-Biased Responses from Natural Killer T Cells\", \"doi\": null, \"pmid\": null, \"journal\": \"Chem Biol\", \"year\": 2011, \"authors\": [\"Tyznik, A.J.\", \"Farber, E.\", \"Girardi, E.\", \"Birkholz, A.\", \"Li, Y.\", \"Chitale, S.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4C56\", \"title\": \"X-ray structure of the complex between staphylococcal enterotoxin B, T cell receptor and major histocompatibility complex class II\", \"keywords\": \"IMMUNE SYSTEM/TOXIN\", \"resolution\": 2.9, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-09-10T00:00:00.000+00:00\", \"release_date\": \"2014-07-23T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\", \"H\"], \"description\": \"T CELL RECEPTOR BETA CHAIN\", \"length\": 244}], \"ligands\": [{\"comp_id\": \"GLYCEROL\", \"chem_id\": \"GOL\"}], \"primary_citation\": {\"title\": \"Structure of the Superantigen Staphylococcal Enterotoxin B in Complex with Tcr and Peptide-Mhc Demonstrates Absence of Tcr-Peptide Contacts.\", \"doi\": null, \"pmid\": null, \"journal\": \"J Immunol\", \"year\": 2014, \"authors\": [\"Rodstrom, K.E.J.\", \"Elbing, K.\", \"Lindkvist-Petersson, K.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4MVB\", \"title\": \"42F3 pCPB7/H-2Ld Complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.088, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-09-23T00:00:00.000+00:00\", \"release_date\": \"2015-08-19T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"D\"], \"description\": \"42F3 beta VmCh\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Immunol\", \"year\": 2016, \"authors\": [\"Adams, J.J.\", \"Narayanan, S.\", \"Birnbaum, M.E.\", \"Sidhu, S.S.\", \"Blevins, S.J.\", \"Gee, M.H.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4MXQ\", \"title\": \"42F3 TCR pCPC5/H-2Ld Complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.596, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-09-26T00:00:00.000+00:00\", \"release_date\": \"2015-08-19T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"D\"], \"description\": \"42F3 beta VmVh chimera\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Immunol\", \"year\": 2016, \"authors\": [\"Adams, J.J.\", \"Narayanan, S.\", \"Birnbaum, M.E.\", \"Sidhu, S.S.\", \"Blevins, S.J.\", \"Gee, M.H.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4N0C\", \"title\": \"42F3 TCR pCPE3/H-2Ld complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.9, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-10-01T00:00:00.000+00:00\", \"release_date\": \"2015-08-19T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"42F3 VmCh beta\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Immunol\", \"year\": 2016, \"authors\": [\"Adams, J.J.\", \"Narayanan, S.\", \"Birnbaum, M.E.\", \"Sidhu, S.S.\", \"Blevins, S.J.\", \"Gee, M.H.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4N5E\", \"title\": \"42F3 TCR pCPA12/H-2Ld complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.059, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-10-09T00:00:00.000+00:00\", \"release_date\": \"2015-08-19T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"D\"], \"description\": \"42F3 beta VmCh\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Immunol\", \"year\": 2016, \"authors\": [\"Adams, J.J.\", \"Narayanan, S.\", \"Birnbaum, M.E.\", \"Sidhu, S.S.\", \"Blevins, S.J.\", \"Gee, M.H.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4NHU\", \"title\": \"The M33 TCR p3M33l/H-2 Ld Complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.9, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2013-11-05T00:00:00.000+00:00\", \"release_date\": \"2015-05-06T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\", \"D\"], \"description\": \"2C m33 beta VmCh chimera\", \"length\": 254}], \"ligands\": [], \"primary_citation\": {\"title\": \"Interrogating TCR Signal Strength and Cross-Reactivity by Yeast Display of pMHC\", \"doi\": null, \"pmid\": null, \"journal\": \"To be published\", \"year\": null, \"authors\": [\"Birnbaum, M.E.\", \"Adams, J.J.\", \"Garcia, K.C.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4ONH\", \"title\": \"Crystal Structure of DN6 TCR\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.008, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-01-28T00:00:00.000+00:00\", \"release_date\": \"2014-10-08T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"1\", \"chains\": [\"B\"], \"description\": \"T-cell receptor alpha\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"CHLORIDE ION\", \"chem_id\": \"CL\"}, {\"comp_id\": \"GLYCEROL\", \"chem_id\": \"GOL\"}], \"primary_citation\": {\"title\": \"Molecular basis of mycobacterial lipid antigen presentation by CD1c and its recognition by alpha beta T cells.\", \"doi\": null, \"pmid\": null, \"journal\": \"Proc Natl Acad Sci U S A\", \"year\": 2014, \"authors\": [\"Roy, S.\", \"Ly, D.\", \"Li, N.S.\", \"Altman, J.D.\", \"Piccirilli, J.A.\", \"Moody, D.B.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4P4K\", \"title\": \"Structural Basis of Chronic Beryllium Disease: Bridging the Gap Between allergic hypersensitivity and auto immunity\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.8, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-03-12T00:00:00.000+00:00\", \"release_date\": \"2014-07-16T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"hTCRav22 beta chain\", \"length\": 242}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"SODIUM ION\", \"chem_id\": \"NA\"}, {\"comp_id\": \"BERYLLIUM\", \"chem_id\": \"0BE\"}], \"primary_citation\": {\"title\": \"Structural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity.\", \"doi\": null, \"pmid\": null, \"journal\": \"Cell\", \"year\": 2014, \"authors\": [\"Clayton, G.M.\", \"Wang, Y.\", \"Crawford, F.\", \"Novikov, A.\", \"Wimberly, B.T.\", \"Kieft, J.S.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4UDT\", \"title\": \"T cell receptor (TRAV22,TRBV7-9) structure\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 1.35, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-12-11T00:00:00.000+00:00\", \"release_date\": \"2015-06-24T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"PROTEIN TRBV7-9, T-CELL RECEPTOR BETA-2 CHAIN C REGION\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"GLYCEROL\", \"chem_id\": \"GOL\"}], \"primary_citation\": {\"title\": \"Structure of Staphylococcal Enterotoxin E in Complex with Tcr Defines the Role of Tcr Loop Positioning in Superantigen Recognition.\", \"doi\": null, \"pmid\": null, \"journal\": \"PLoS One\", \"year\": 2015, \"authors\": [\"Rodstrom, K.E.J.\", \"Regenthal, P.\", \"Lindkvist-Petersson, K.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4UDU\", \"title\": \"Crystal structure of staphylococcal enterotoxin E in complex with a T cell receptor\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.5, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-12-11T00:00:00.000+00:00\", \"release_date\": \"2015-06-24T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"PROTEIN TRBV7-9, T-CELL RECEPTOR BETA-2 CHAIN C REGION\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"ZINC ION\", \"chem_id\": \"ZN\"}, {\"comp_id\": \"SODIUM ION\", \"chem_id\": \"NA\"}], \"primary_citation\": {\"title\": \"Structure of Staphylococcal Enterotoxin E in Complex with Tcr Defines the Role of Tcr Loop Positioning in Superantigen Recognition.\", \"doi\": null, \"pmid\": null, \"journal\": \"PLoS One\", \"year\": 2015, \"authors\": [\"Rodstrom, K.E.J.\", \"Regenthal, P.\", \"Lindkvist-Petersson, K.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4WW1\", \"title\": \"Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8 and Beta Chain-TRBV7-8\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 1.38, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-11-10T00:00:00.000+00:00\", \"release_date\": \"2016-02-03T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"TCR Beta Chain-TRBV7-8\", \"length\": 243}], \"ligands\": [], \"primary_citation\": {\"title\": \"Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Commun\", \"year\": 2016, \"authors\": [\"Le Nours, J.\", \"Praveena, T.\", \"Pellicci, D.G.\", \"Gherardin, N.A.\", \"Ross, F.J.\", \"Lim, R.T.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4WW2\", \"title\": \"Crystal structure of human TCR Alpha Chain-TRAV21-TRAJ8, Beta Chain-TRBV7-8, Antigen-presenting glycoprotein CD1d, and Beta-2-microglobulin\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.48, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-11-10T00:00:00.000+00:00\", \"release_date\": \"2016-02-03T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"TCR Beta Chain-TRBV7-8\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]\", \"chem_id\": \"JLS\"}], \"primary_citation\": {\"title\": \"Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Commun\", \"year\": 2016, \"authors\": [\"Le Nours, J.\", \"Praveena, T.\", \"Pellicci, D.G.\", \"Gherardin, N.A.\", \"Ross, F.J.\", \"Lim, R.T.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4WWK\", \"title\": \"Crystal structure of human TCR Alpha Chain-TRAV12-3, Beta Chain-TRBV6-5, Antigen-presenting molecule CD1d, and Beta-2-microglobulin\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.1, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2014-11-11T00:00:00.000+00:00\", \"release_date\": \"2016-02-03T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"2\", \"chains\": [\"B\"], \"description\": \"TCR Beta Chain-TRBV6-5\", \"length\": 243}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]\", \"chem_id\": \"JLS\"}], \"primary_citation\": {\"title\": \"Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.\", \"doi\": null, \"pmid\": null, \"journal\": \"Nat Commun\", \"year\": 2016, \"authors\": [\"Le Nours, J.\", \"Praveena, T.\", \"Pellicci, D.G.\", \"Gherardin, N.A.\", \"Ross, F.J.\", \"Lim, R.T.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4Y16\", \"title\": \"Crystal structure of the mCD1d/NC-aGC/iNKTCR ternary complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.6, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2015-02-06T00:00:00.000+00:00\", \"release_date\": \"2015-06-03T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"N-[(2S,3S,4R)-3,4-dihydroxy-1-{[6-O-(naphthalen-1-ylcarbamoyl)-alpha-D-galactopy\", \"chem_id\": \"48G\"}, {\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}], \"primary_citation\": {\"title\": \"Lipid and Carbohydrate Modifications of alpha-Galactosylceramide Differently Influence Mouse and Human Type I Natural Killer T Cell Activation.\", \"doi\": null, \"pmid\": null, \"journal\": \"J Biological Chem\", \"year\": 2015, \"authors\": [\"Birkholz, A.\", \"Nemcovic, M.\", \"Yu, E.D.\", \"Girardi, E.\", \"Wang, J.\", \"Khurana, A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4Y2D\", \"title\": \"Crystal structure of the mCD1d/7DW8-5/iNKTCR ternary complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.05, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2015-02-09T00:00:00.000+00:00\", \"release_date\": \"2015-05-27T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"11-(4-fluorophenyl)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyo\", \"chem_id\": \"7DW\"}, {\"comp_id\": \"alpha-L-fucopyranose\", \"chem_id\": \"FUC\"}], \"primary_citation\": {\"title\": \"Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells\", \"doi\": null, \"pmid\": null, \"journal\": \"To be published\", \"year\": null, \"authors\": [\"Birkholz, A.\", \"Nemcovic, M.\", \"Yu, E.D.\", \"Girardi, E.\", \"Wang, J.\", \"Khurana, A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4Y4F\", \"title\": \"Crystal structure of the mCD1d/GCK127/iNKTCR ternary complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.19, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2015-02-10T00:00:00.000+00:00\", \"release_date\": \"2015-05-27T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(1R)-1,5-anhydro-1-[(1E,3S,4S,5R)-4,5-dihydroxy-3-(nonacosanoylamino)nonadec-1-e\", \"chem_id\": \"49M\"}], \"primary_citation\": {\"title\": \"Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells\", \"doi\": null, \"pmid\": null, \"journal\": \"To be published\", \"year\": null, \"authors\": [\"Birkholz, A.\", \"Nemcovic, M.\", \"Yu, E.D.\", \"Girardi, E.\", \"Wang, J.\", \"Khurana, A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4Y4H\", \"title\": \"Crystal structure of the mCD1d/GCK152/iNKTCR ternary complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 3.1, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2015-02-10T00:00:00.000+00:00\", \"release_date\": \"2015-05-27T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\", \"H\"], \"description\": \"Chimeric TCR Vbeta8.2 chain (mouse variable domain/ human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(1R)-1,5-anhydro-1-{(1E,3S,4S,5R)-4,5-dihydroxy-3-[(8-phenyloctanoyl)amino]nonad\", \"chem_id\": \"49X\"}], \"primary_citation\": {\"title\": \"Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells\", \"doi\": null, \"pmid\": null, \"journal\": \"To be published\", \"year\": null, \"authors\": [\"Birkholz, A.\", \"Nemcovic, M.\", \"Yu, E.D.\", \"Girardi, E.\", \"Wang, J.\", \"Khurana, A.\"]}, \"related_emdb\": []}, {\"pdb_id\": \"4Y4K\", \"title\": \"Crystal structure of the mCD1d/EF77/iNKTCR ternary complex\", \"keywords\": \"IMMUNE SYSTEM\", \"resolution\": 2.9, \"method\": \"X-RAY DIFFRACTION\", \"deposit_date\": \"2015-02-10T00:00:00.000+00:00\", \"release_date\": \"2015-05-27T00:00:00.000+00:00\", \"my_uniprot_chains\": [{\"entity_id\": \"4\", \"chains\": [\"D\"], \"description\": \"chimeric TCR Vbeta8.2 chain (mouse variable, human constant domain)\", \"length\": 241}], \"ligands\": [{\"comp_id\": \"2-acetamido-2-deoxy-beta-D-glucopyranose\", \"chem_id\": \"NAG\"}, {\"comp_id\": \"(4Z)-9-[(1R,2R)-2-decylcyclopropyl]-N-[(2S,3S,4S)-1-(alpha-D-galactopyranosyloxy\", \"chem_id\": \"49Y\"}], \"primary_citation\": {\"title\": \"Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells\", \"doi\": null, \"pmid\": null, \"journal\": \"To be published\", \"year\": null, \"authors\": [\"Birkholz, A.\", \"Nemcovic, M.\", \"Yu, E.D.\", \"Girardi, E.\", \"Wang, J.\", \"Khurana, A.\"]}, \"related_emdb\": []}]}, \"alphafold\": {\"uniprot_id\": \"A0A5B9\", \"model_count\": 1, \"models\": [{\"entryId\": \"AF-A0A5B9-F1\", \"uniprotAccession\": \"A0A5B9\", \"uniprotDescription\": \"T cell receptor beta constant 2\", \"organismScientificName\": \"Homo sapiens\", \"sequenceLength\": null, \"globalMetricValue\": 94.0, \"modelCreatedDate\": \"2025-08-01T00:00:00Z\", \"latestVersion\": 6, \"cifUrl\": \"https://alphafold.ebi.ac.uk/files/AF-A0A5B9-F1-model_v6.cif\", \"pdbUrl\": \"https://alphafold.ebi.ac.uk/files/AF-A0A5B9-F1-model_v6.pdb\", \"paeImageUrl\": \"https://alphafold.ebi.ac.uk/files/AF-A0A5B9-F1-predicted_aligned_error_v6.png\"}]}, \"emdb\": {\"uniprot_id\": \"A0A5B9\", \"emdb_count\": 0, \"entries\": []}}", "2026-05-27T10:45:01.478443+00:00"]], "columns": ["target_id", "pdb_count_total", "pdb_count_detailed", "pdb_best_resolution_A", "alphafold_mean_pLDDT", "alphafold_model_count", "emdb_count", "has_cryoEM", "has_xray", "has_NMR", "raw_json", "recorded_utc"], "primary_keys": ["target_id"], "primary_key_values": ["A0A5B9"], "units": {}, "query_ms": 0.5136069994478021, "source": "apt-scout automated curation pipeline (E. Dohi, NCNP) \u2014 values harvested from public databases; raw source stored per target", "source_url": "https://apt-scout.org", "license": "CC BY 4.0", "license_url": "https://creativecommons.org/licenses/by/4.0/"}