{"database": "scout", "table": "v_kd", "is_view": true, "human_description_en": "where assay_method = \"SPR\", measurement_class = \"non_intrinsic\" and sequence_status = \"verified_in_text_or_SI\" sorted by kd_log10_molar", "rows": [[154, "thrombin", "protein", "P00734", "HD1-22", "GGTTGGTGTGGTTGGAAAAAAAAAAAAGTCCGTGGTAGGGCAGGTTGGGGTGACT", "6.5e-10 M", -9.187, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", null, null, null, null, "DNA", "bivalent fusion; poly-dA linker", "18826387", "10.1111/j.1538-7836.2008.03162.x", "HD1-22 | Thrombin | K D ( M) | 6.5 \u00b7 10 ) 10", "step2c_literal_v3"], [251, "Human thrombin", "protein", "P00734", "Pse08-29", "TGACCTCTAGTGACTGATTTACGAGTC", "2.6 nM", -8.585, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "backfill_text_verified", "KEEP_seq_in_figure", "SPR", null, 7.4, "PBS [pH 7.4], 0.05 [v/v%] surfactant Tween 20", null, "DNA", null, "37621412", "10.1016/j.omtn.2023.07.038", "Pse(08 - 29) | 1.33 10^6 | 3.47 10^-3 | 2.6", "step2c_literal_v3"], [156, "prothrombin", "protein", "P00734", "HD1", "GGTTGGTGTGGTTGG", "3.5e-09 M", -8.456, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", null, null, null, null, "DNA", null, "18826387", "10.1111/j.1538-7836.2008.03162.x", "HD1 | Prothrombin+ phospholipids | K D ( M) | 3.5 \u00b7 10 ) 9", "step2c_literal_v3"], [252, "Mouse thrombin", "protein", null, "Pse08-29", "TGACCTCTAGTGACTGATTTACGAGTC", "6.3 nM", -8.201, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "backfill_text_verified", "KEEP_seq_in_figure", "SPR", null, 7.4, "PBS [pH 7.4], 0.05 [v/v%] surfactant Tween 20", null, "DNA", null, "37621412", "10.1016/j.omtn.2023.07.038", "Pse(08 - 29) | 6.72 10^5 | 4.26 10^-3 | 6.3", "step2c_literal_v3"], [194, "\u03b1-thrombin", "protein", "P00734", "TBA-iT7", "GGTTGGTGTGGTTGG", "9.9 nM", -8.004, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", "3'-inverted thymidine at position 7", "30735210", "10.1039/c9ob00053d", "TBA-iT7 | 9.9", "step2c_literal_v3"], [198, "\u03b1-thrombin", "protein", "P00734", "TBA-iT9", "GGTTGGTGTGGTTGG", "11.5 nM", -7.939, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", "3'-inverted thymidine at position 9", "30735210", "10.1039/c9ob00053d", "TBA-iT9 | 11.5", "step2c_literal_v3"], [196, "\u03b1-thrombin", "protein", "P00734", "TBA-G8-iT8", "GGTTGGTTTGGTTGG", "12.4 nM", -7.907, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", "3'-inverted thymidine at position 8", "30735210", "10.1039/c9ob00053d", "TBA-G8-iT8 | 12.4", "step2c_literal_v3"], [193, "\u03b1-thrombin", "protein", "P00734", "TBA-iT7", "GGTTGGTGTGGTTGG", "15.9 nM", -7.799, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", "3'-inverted thymidine at position 7", "30735210", "10.1039/c9ob00053d", "TBA-iT7 | 15.9", "step2c_literal_v3"], [189, "\u03b1-thrombin", "protein", "P00734", "TBA", "GGTTGGTGTGGTTGG", "27.2 nM", -7.565, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", null, "30735210", "10.1039/c9ob00053d", "TBA | 27.2", "step2c_literal_v3"], [192, "\u03b1-thrombin", "protein", "P00734", "TBA-iT3", "GGTTGGTGTGGTTGG", "33.9 nM", -7.47, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", "3'-inverted thymidine at position 3", "30735210", "10.1039/c9ob00053d", "TBA-iT3 | 33.9", "step2c_literal_v3"], [200, "\u03b1-thrombin", "protein", "P00734", "TBA-iT12", "GGTTGGTGTGGTTGG", "37.0 nM", -7.432, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", "3'-inverted thymidine at position 12", "30735210", "10.1039/c9ob00053d", "TBA-iT12 | 37.0", "step2c_literal_v3"], [195, "\u03b1-thrombin", "protein", "P00734", "TBA-G8-iT8", "GGTTGGTTTGGTTGG", "37.1 nM", -7.431, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", "3'-inverted thymidine at position 8", "30735210", "10.1039/c9ob00053d", "TBA-G8-iT8 | 37.1", "step2c_literal_v3"], [197, "\u03b1-thrombin", "protein", "P00734", "TBA-iT9", "GGTTGGTGTGGTTGG", "41.0 nM", -7.387, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", "3'-inverted thymidine at position 9", "30735210", "10.1039/c9ob00053d", "TBA-iT9 | 41.0", "step2c_literal_v3"], [190, "\u03b1-thrombin", "protein", "P00734", "TBA", "GGTTGGTGTGGTTGG", "42.7 nM", -7.37, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, null, "100 mM KCl", null, "DNA", null, "30735210", "10.1039/c9ob00053d", "TBA | 42.7", "step2c_literal_v3"], [199, "\u03b1-thrombin", "protein", "P00734", "TBA-iT12", "GGTTGGTGTGGTTGG", "46.8 nM", -7.33, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", "3'-inverted thymidine at position 12", "30735210", "10.1039/c9ob00053d", "TBA-iT12 | 46.8", "step2c_literal_v3"], [191, "\u03b1-thrombin", "protein", "P00734", "TBA-iT3", "GGTTGGTGTGGTTGG", "57.3 nM", -7.242, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", 298.15, 7.4, "138 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 1.76 mM KH2PO4, pH 7.4, 0.05% Tween-20", null, "DNA", "3'-inverted thymidine at position 3", "30735210", "10.1039/c9ob00053d", "TBA-iT3 | 57.3", "step2c_literal_v3"], [155, "prothrombin", "protein", "P00734", "HD1-22", "GGTTGGTGTGGTTGGAAAAAAAAAAAAGTCCGTGGTAGGGCAGGTTGGGGTGACT", "6.7e-08 M", -7.174, "non_intrinsic", "Kd", "Gold", "v4", "extraction_verified", "verified_in_text_or_SI", "original", null, "SPR", null, null, null, null, "DNA", "bivalent fusion; poly-dA linker", "18826387", "10.1111/j.1538-7836.2008.03162.x", "HD1-22 | Prothrombin+ phospholipids | K D ( M) | 6.7 \u00b7 10 ) 8", "step2c_literal_v3"]], "truncated": false, "filtered_table_rows_count": 17, "expanded_columns": [], "expandable_columns": [], "columns": ["id", "target_name_canonical", "target_type", "target_uniprot", "aptamer_name", "aptamer_seq", "kd_reported", "kd_log10_molar", "measurement_class", "binding_constant_type", "tier", "source_origin", "verification_level", "sequence_status", "seq_source", "pi_provenance_flag", "assay_method", "assay_temperature_k", "assay_ph", "assay_buffer", "assay_cations", "aptamer_chemistry", "aptamer_modifications", "source_pmid", "doi", "verbatim_quote", "source_db"], "primary_keys": [], "units": {}, "query": {"sql": "select id, target_name_canonical, target_type, target_uniprot, aptamer_name, aptamer_seq, kd_reported, kd_log10_molar, measurement_class, binding_constant_type, tier, source_origin, verification_level, sequence_status, seq_source, pi_provenance_flag, assay_method, assay_temperature_k, assay_ph, assay_buffer, assay_cations, aptamer_chemistry, aptamer_modifications, source_pmid, doi, verbatim_quote, source_db from v_kd where \"assay_method\" = :p0 and \"measurement_class\" = :p1 and \"sequence_status\" = :p2 order by kd_log10_molar limit 51", "params": {"p0": "SPR", "p1": "non_intrinsic", "p2": "verified_in_text_or_SI"}}, "facet_results": {"measurement_class": {"name": "measurement_class", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "non_intrinsic", "label": "non_intrinsic", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&sequence_status=verified_in_text_or_SI", "selected": true}], "truncated": false}, "target_type": {"name": "target_type", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "protein", "label": "protein", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&target_type=protein", "selected": false}], "truncated": false}, "tier": {"name": "tier", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "Gold", "label": "Gold", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&tier=Gold", "selected": false}], "truncated": false}, "assay_method": {"name": "assay_method", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "SPR", "label": "SPR", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "selected": true}], "truncated": false}, "binding_constant_type": {"name": "binding_constant_type", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "Kd", "label": "Kd", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&binding_constant_type=Kd", "selected": false}], "truncated": false}, "verification_level": {"name": "verification_level", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "extraction_verified", "label": "extraction_verified", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&verification_level=extraction_verified", "selected": false}], "truncated": false}, "sequence_status": {"name": "sequence_status", "type": "column", "hideable": false, "toggle_url": "/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI", "results": [{"value": "verified_in_text_or_SI", "label": "verified_in_text_or_SI", "count": 17, "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic", "selected": true}], "truncated": false}}, "suggested_facets": [{"name": "target_name_canonical", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=target_name_canonical"}, {"name": "aptamer_name", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=aptamer_name"}, {"name": "aptamer_seq", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=aptamer_seq"}, {"name": "seq_source", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=seq_source"}, {"name": "assay_buffer", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=assay_buffer"}, {"name": "aptamer_modifications", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=aptamer_modifications"}, {"name": "source_pmid", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=source_pmid"}, {"name": "doi", "toggle_url": "https://apt-scout.org/scout/v_kd.json?assay_method=SPR&measurement_class=non_intrinsic&sequence_status=verified_in_text_or_SI&_facet=doi"}], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 107.61426109820604, "source": "apt-scout automated curation pipeline (E. Dohi, NCNP) \u2014 values harvested from public databases; raw source stored per target", "source_url": "https://apt-scout.org", "license": "CC BY 4.0", "license_url": "https://creativecommons.org/licenses/by/4.0/"}