Binding affinities (Kd) — source-verified (view)
Data license: CC BY 4.0 · Data source: apt-scout automated curation pipeline (E. Dohi, NCNP) — values harvested from public databases; raw source stored per target
- target_name_canonical
- Target as named in the source paper.
- target_type
- protein / cell-line+EV / glycan-conjugate. Filter to 'protein' for molecular targets.
- target_uniprot
- UniProt accession when a human protein (sparse for now; links to apt-scout target).
- aptamer_name
- Aptamer identifier as reported.
- kd_reported
- Kd value AS REPORTED in the paper (value + unit). Units are MIXED — do NOT compare this column directly.
- kd_log10_molar
- log10(Kd in molar). THE column to sort / compare / learn on (lower = tighter).
- measurement_class
- intrinsic = equilibrium vs purified target; non_intrinsic = apparent/cellular or avidity (NOT comparable to intrinsic).
- binding_constant_type
- Kd / apparent-Kd etc. as reported.
- assay_method
- SPR / filter binding / flow cytometry / ITC / BLI …
- assay_temperature_k
- Assay temperature (K) — a reason the same pair can have several rows.
- source_pmid
- PubMed ID of the source paper (links out).
- verbatim_quote
- The exact sentence the value was taken from.
- verification_level
- QC status (honest, growing): human_verified / human_corrected = a logged human verdict from the stratified-random sample; multi_agent_verified = passed independent multi-agent (L2) check; extraction_verified = extraction-pipeline verified; automated. Human verification is in progress: as of this release 0 records carry a logged human verdict — the published set is multi-agent-/extraction-verified, and human spot-checking is being added post-publication (version-tracked). No record is labelled human_verified without a logged human review.
- sequence_status
- Aptamer-sequence provenance: verified_in_text_or_SI = sequence verbatim-verified against the source text/SI (shown); pending_manual_supp / pending_supp_oa / pending_manual_figure = sequence reported only in a (often paywalled) SI or a figure, being curated post-submission; no_single_sequence_pool = a pool/library/primer, no single sequence exists.
- pi_provenance_flag
- PI manual-review flag: KEEP_seq_in_figure = valid record, sequence is in a 3D-structure figure; FLAG_cited_data = Kd may be a value cited from elsewhere, re-verify. (EXCLUDE rows are hidden from this view.)
- seq_source
- original (already in source DB) / backfill_text_verified (recovered from paper or SI text).
57 rows where sequence_status = "pending_manual_supp", tier = "Gold" and verification_level = "multi_agent_verified" sorted by kd_log10_molar
This data as json, CSV (advanced)
Suggested facets: target_uniprot, source_origin, assay_temperature_k, assay_ph, assay_buffer, aptamer_chemistry, aptamer_modifications
assay_method 9
- fluorescence 16
- SPR 4
- dot_blot 4
- ELISA 3
- MST 3
- flow_cytometry 3
- EMSA 2
- ITC 2
- DPV 1
measurement_class 3
verification_level 1
- multi_agent_verified · 57 ✖
tier 1
- Gold · 57 ✖
target_type 1
- protein 57
sequence_status 1
- pending_manual_supp · 57 ✖
binding_constant_type 1
- Kd 57
| id | target_name_canonical | target_type | target_uniprot | aptamer_name | aptamer_seq | kd_reported | kd_log10_molar ▼ | measurement_class | binding_constant_type | tier | source_origin | verification_level | sequence_status | seq_source | pi_provenance_flag | assay_method | assay_temperature_k | assay_ph | assay_buffer | assay_cations | aptamer_chemistry | aptamer_modifications | source_pmid | doi | verbatim_quote | source_db |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 406 | SARS-CoV-2 spike protein (wild type) | protein | DSA1N5 | 3e-12 M | -11.523 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | dot_blot | undiluted wastewater | DNA | dimeric | 36926840 | 10.1021/acssensors.2c02655 | DSA1N5 also demonstrated high binding affinity in undiluted wastewater samples ( K d = 3.0 -3.9 pM for WTPV, Figure S1A,B). | step2c_acs_v1 | |||||||
| 743 | SARS-CoV-2 spike protein (wild type) | protein | DSA1N5 | 3.9e-12 M | -11.409 | avidity_multivalent | Kd | Gold | ACS | multi_agent_verified | pending_manual_supp | dot_blot | undiluted wastewater | DNA | dimeric | 36926840 | 10.1021/acssensors.2c02655 | DSA1N5 also demonstrated high binding affinity in undiluted wastewater samples ( K d = 3.0 -3.9 pM for WTPV, Figure S1A,B). | step2c_acs_v1 | |||||||
| 404 | SARS-CoV-2 pseudotyped lentivirus (omicron variant) | protein | DSA1N5 | 4.8e-12 M | -11.319 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | dot_blot | deionized water | DNA | dimeric | 36926840 | 10.1021/acssensors.2c02655 | This study demonstrates that DSA1N5 has high affinity for recognizing OMPV with a K d value of 4.8 pM, which is in the same order of magnitude as that measured for the WTPV (2.1 pM) in deionized water (DI water) | step2c_acs_v1 | |||||||
| 405 | SARS-CoV-2 pseudotyped lentivirus (omicron variant) | protein | DSA1N5 | 5.1e-12 M | -11.292 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | dot_blot | wastewater (diluted 50% with binding buffer) | DNA | dimeric | 36926840 | 10.1021/acssensors.2c02655 | DSA1N5 preserves its binding affinity in 50% wastewater ( K d = 2.1 -4.1 pM for WTPV and 5.1 for OMPV in wastewater). | step2c_acs_v1 | |||||||
| 351 | thrombin | protein | P00734 | Supra-TBA15/29-GO | 1.9e-11 M | -10.721 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | DNA | Graphene Oxide immobilization; poly(adenine) anchor | 31157200 | 10.3389/fchem.2019.00280 | Supra-TBA15 / 29-GO prepared with GO (40 μ g mL -1 ) at 60 ◦ C exhibited much higher binding affinity toward thrombin ( K d = 1.9 × 10 -11 M, Figure S10 , Supporting Information). | step2c_acs_v1 | ||||||||
| 478 | FLRPp (O serotype) | protein | FMD_1 | 3.46e-10 M | -9.461 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | SPR | DNA | 42010751 | 10.1021/acs.analchem.5c04748 | dissociation constants ( KD ) of 3.46 × 10 -10 M | step2c_acs_v1 | |||||||||
| 459 | PSMA | protein | Q04609 | C3 | 8.000000000000001e-10 M | -9.097 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | EMSA | 5 mM Mg2+ | DNA | phenol-dT; naphthyl-dC; PSMA-617 bait | 41126016 | 10.1021/jacs.5c13307 | an exemplar shows very high affinity for PSMA ( K d ∼ 0.8 nM). | step2c_acs_v1 | ||||||
| 458 | PSMA | protein | Q04609 | C3 (without fluorescein) | 1e-09 M | -9.0 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | EMSA | DNA | phenol-dT; naphthyl-dC; Cy5 label | 41126016 | 10.1021/jacs.5c13307 | EMSA data show that Cy5-labeled C3 without fluorescein binds PSMA just as strongly as the parent construct, with an apparent K d of ∼ 1 nM (Figure S9). | step2c_acs_v1 | |||||||
| 337 | human α-thrombin | protein | P00734 | LOOPER modified thrombin aptamer | 1.6000000000000003e-09 M | -8.796 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | SPR | DNA | diversely functionalized; heteromultivalent | 28938065 | 10.1021/jacs.7b07241 | Using single-cycle kinetics surface plasmon resonance (SPR), the LOOPER aptamer exhibited a Kd of 1.6 nM | step2c_acs_v1 | |||||||
| 316 | CD44-HABD | protein | Motif 4 (ADDA adduct) | 2e-09 M | -8.699 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23057694 | 10.1021/bi300471d | motifs 2 and 4(ADDA adduct) have ~2 nM affinity to CD44-HABD | step2c_acs_v1 | |||||||||||
| 322 | S-adenosylmethionine | protein | P17707 | Bs SAM-I riboswitch | 3.0000000000000004e-09 M | -8.523 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23343213 | 10.1021/ja310742m | Both μ MSA values agree well with results from the in-line probing assays performed using identical buffer conditions: ... 3 nM K d , respectively | step2c_acs_v1 | ||||||||||
| 323 | S-adenosylmethionine | protein | P17707 | Pi SAM-I riboswitch | 3.0000000000000004e-09 M | -8.523 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23343213 | 10.1021/ja310742m | which is on the order of the 3 nM value measured using a conventional inline probing assay | step2c_acs_v1 | ||||||||||
| 338 | human α-thrombin | protein | P00734 | LOOPER modified thrombin aptamer | 4e-09 M | -8.398 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 28938065 | 10.1021/jacs.7b07241 | Preliminary binding analysis by label-free microscale thermophoresis showed a promising dissociation constant K d = 4 nM for thrombin | step2c_acs_v1 | ||||||||||
| 465 | SARS-CoV-2 spike RBD | protein | Aptx2-L | 4.900000000000001e-09 M | -8.31 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | flow_cytometry | 298.15 | 7.4 | PBS, pH 7.4, 0.55 mM MgCl2 | DNA | 41498844 | 10.1021/acsami.5c16490 | The Aptx2-L variant showed superior affinity with a dissociation constant ( K d) of 4.9 nM | step2c_acs_v1 | ||||||
| 461 | Lipopolysaccharide from Klebsiella pneumoniae ATCC 15380 | protein | aptamer seq. 5 | 6.68e-09 M | -8.175 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | DPV | 1 × PBS | DNA | biotin | 41323700 | 10.1039/d5ra06759f | The binding affinity of aptamer seq. 5 was 6.68 nM (Fig. 9C). | step2c_acs_v1 | |||||||
| 348 | NP | protein | Q16612 | NP-C04 | 8.1e-09 M | -8.092 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.4 | 20 mM HEPES, 150 mM NaCl, 2 mM KCl, 2 mM MgCl2, and 2 mM CaCl2 (pH 7.4) | DNA | FAM | 30740973 | 10.1021/acs.analchem.8b04623 | the K d values of NP-D01, NP-C04, and NP-D02 were 76..1 ± 10.9, 8.1 ± 2.4, and 41.3 ± 9.5 nM, respectively. | step2c_acs_v1 | |||||
| 423 | TAR RNA | protein | Q13395 | TAR RNA aptamer (best binding) | 9.000000000000001e-09 M | -8.046 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 39167715 | 10.1021/jacs.4c08824 | A Biolayer Interferometry (BLI) experiment revealed that TAR RNA aptamers with the best binding affinity exhibited the dissociation constant ( K D) at 9 nM | step2c_acs_v1 | ||||||||||
| 345 | streptavidin | protein | S8 | 1e-08 M | -8.0 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 30520292 | 10.1021/acssensors.8b00945 | At pH 7.4, we determined that S8 has a K d of 10 nM | step2c_acs_v1 | |||||||||||
| 366 | trastuzumab | protein | Q9ULR3 | CH1S-3 | 1.0300000000000001e-08 M | -7.987 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | MST | 298.15 | washing bu ff er with the addition of 0.005% Tween 20 | DNA | 5'-Cy5 | 32516525 | 10.1021/jacs.9b13370 | a ffi nity with a K d value of aptamer CH1S-3 of 10.3 nM | step2c_acs_v1 | |||||
| 334 | 17 β -Estradiol | protein | P42167 | 22-mer aptamer | 1.1000000000000001e-08 M | -7.959 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 25803717 | 10.1021/acs.analchem.5b00335 | new 35-mer and 22-mer aptamers were generated with K D ' s of 14 and 11 nM | step2c_acs_v1 | ||||||||||
| 412 | Salmonella typhimurium | protein | Q8IWE5 | NTri-triApt | 1.1890000000000001e-08 M | -7.925 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | ELISA | 310.15 | 7.5 | PBS | DNA | biotin | 37893744 | 10.3390/foods12203853 | the Kds of the NTri-monoApt, NTri-biApt, and NTri-triApt were measured to be 57.32 nM, 43.09 nM, and 11.89 nM, respectively | step2c_acs_v1 | ||||
| 333 | 17 β -Estradiol | protein | P42167 | 35-mer aptamer | 1.4000000000000001e-08 M | -7.854 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 25803717 | 10.1021/acs.analchem.5b00335 | new 35-mer and 22-mer aptamers were generated with K D ' s of 14 and 11 nM | step2c_acs_v1 | ||||||||||
| 314 | hMMP-9 | protein | F3Bomf | 2e-08 M | -7.699 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | SPR | 296.15 | PBS buffer | 2'-OMe-RNA | 2'-O-methyl purine; 2'-fluoro pyrimidine; 5'-hexylamino linker; 5'-MAG3 conjugate | 23043415 | 10.1021/bc300146c | The K d was taken as the concentration leading to half saturation, i.e., about 20 nM. | step2c_acs_v1 | ||||||
| 315 | hMMP-9 | protein | F3 | 2e-08 M | -7.699 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 2'F-RNA | 2'-fluoro pyrimidine ribonucleosides | 23043415 | 10.1021/bc300146c | exhibits a strong a ffi nity for hMMP-9 ( K d = 20 nM) | step2c_acs_v1 | |||||||||
| 466 | SARS-CoV-2 spike RBD | protein | Aptx2-S | 2.17e-08 M | -7.664 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | flow_cytometry | 298.15 | 7.4 | PBS, pH 7.4, 0.55 mM MgCl2 | DNA | 41498844 | 10.1021/acsami.5c16490 | compared to 21.7 nM for Aptx2-S | step2c_acs_v1 | ||||||
| 480 | NMP22 | protein | Q14980 | NT2a | 2.4260000000000003e-08 M | -7.615 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | MST | DNA | biotin | 42173503 | 10.1021/acs.analchem.6c00738 | The K d values were also determined using MicroScale Thermophoresis (MST), and the K d values of NT2a and NT4a were determined to be 24.26 ± 10.47 and 77.29 ± 25.78 nM (Figures 2d and S3). | step2c_acs_v1 | |||||||
| 321 | S-adenosylmethionine | protein | P17707 | Bs SAM-I riboswitch | 2.5000000000000002e-08 M | -7.602 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23343213 | 10.1021/ja310742m | Both μ MSA values agree well with results from the in-line probing assays performed using identical buffer conditions: 25 nM K d | step2c_acs_v1 | ||||||||||
| 424 | verrucarin A | protein | Ver1_JYP | 2.9500000000000003e-08 M | -7.53 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.4 | SELEX buffer | DNA | 39404132 | 10.1021/acs.analchem.4c03307 | The novel ssDNA aptamer exhibited a binding affinity of 29.5 nM | step2c_acs_v1 | |||||||
| 325 | L-TAR RNA | protein | Q13395 | D-6-4t | 3.0000000000000004e-08 M | -7.523 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23977945 | 10.1021/ja406634g | The Kd of in vitro transcribed D-6-4t for L-TAR is 30 nM | step2c_acs_v1 | ||||||||||
| 353 | Thrombin | protein | P00734 | Antithrombin aptamer | 3.3000000000000004e-08 M | -7.481 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 31580650 | 10.1021/acs.analchem.9b00081 | Antithrombin aptamer with KD of 33 nM was successfully isolated by four rounds of MCP-SELEX. | step2c_acs_v1 | ||||||||||
| 354 | paramylon | protein | Par-15 | 3.49e-08 M | -7.457 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.5 | binding buffer (50 mM Tris, 150 mM NaCl, 5 mM MgCl2, 1 mM EDTA, pH 7.5) | DNA | FAM | 31809034 | 10.1021/acs.jafc.9b04588 | The estimated K d values of fi ve selected aptamers, Par-7, Par-15, Par-18, Par-20, and Par-22, are 17.45 ± 2.61, 34.90 ± 5.83, 64.06 ± 6.72, 123.81 ± 13.41, and 249.52 ± 46.39 nM, respectively. | step2c_acs_v1 | ||||||
| 413 | Salmonella typhimurium | protein | Q8IWE5 | NTri-biApt | 4.3090000000000004e-08 M | -7.366 | avidity_multivalent | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | ELISA | 310.15 | 7.5 | PBS | DNA | biotin | 37893744 | 10.3390/foods12203853 | the Kds of the NTri-monoApt, NTri-biApt, and NTri-triApt were measured to be 57.32 nM, 43.09 nM, and 11.89 nM, respectively | step2c_acs_v1 | ||||
| 311 | HAP 1b | protein | Aptamer 21 | 5.0000000000000004e-08 M | -7.301 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 21899290 | 10.1021/nn2006927 | A high-affinity RNA aptamer (K d = 50 nM) was efficiently identified by SELEX against a heteroaryl dihydropyrimidine structure | step2c_acs_v1 | |||||||||||
| 414 | Salmonella typhimurium | protein | Q8IWE5 | NTri-monoApt | 5.7320000000000006e-08 M | -7.242 | apparent_cellular | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | ELISA | 310.15 | 7.5 | PBS | DNA | biotin | 37893744 | 10.3390/foods12203853 | the Kds of the NTri-monoApt, NTri-biApt, and NTri-triApt were measured to be 57.32 nM, 43.09 nM, and 11.89 nM, respectively | step2c_acs_v1 | ||||
| 442 | PTK7 | protein | Q13308 | Sgc8c-Si6 | 5.7230000000000004e-08 M | -7.242 | apparent_cellular | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | flow_cytometry | 277.15 | washing buffer supplemented with 1 mg/mL BSA and 1 mM yeast tRNA | DNA | poly-Si | 40415219 | 10.1021/acs.analchem.5c01062 | Sgc8c-Si6 maintained strong binding affinity ( K d = 57.23 nM) | step2c_acs_v1 | |||||
| 355 | paramylon | protein | Par-18 | 6.406e-08 M | -7.193 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.5 | binding buffer (50 mM Tris, 150 mM NaCl, 5 mM MgCl2, 1 mM EDTA, pH 7.5) | DNA | FAM | 31809034 | 10.1021/acs.jafc.9b04588 | The estimated K d values of fi ve selected aptamers, Par-7, Par-15, Par-18, Par-20, and Par-22, are 17.45 ± 2.61, 34.90 ± 5.83, 64.06 ± 6.72, 123.81 ± 13.41, and 249.52 ± 46.39 nM, respectively. | step2c_acs_v1 | ||||||
| 400 | 6'-sialyllactose | protein | Q9Y3R4 | Apt9-1 | 9.175000000000001e-08 M | -7.037 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 298.15 | 7.4 | 10 mM PBS (pH 7.4) | DNA | 36700646 | 10.1021/acs.jafc.2c07784 | A 35 nt truncated aptamer Apt9-1 ( K d = 91.75 nM) with higher affinity than Apt9 was finally obtained. | step2c_acs_v1 | |||||
| 420 | 17 β -estradiol | protein | P42167 | HEV1 | 9.276e-08 M | -7.033 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | MST | 7.6 | 20 mM Tris (pH 7.6), 300 mM NaCl, 5 mM MgCl2, 0.01% Tween 20 | DNA | 38276613 | 10.3390/molecules29020535 | the dissociation constant (KD value) is 92.76 ± 66.02 nM as calculated by the calculation function that comes with the system. | step2c_acs_v1 | ||||||
| 402 | EpCAM | protein | P16422 | SYL3C | 9.700000000000001e-08 M | -7.013 | apparent_cellular | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 36856721 | 10.1021/acsami.2c22820 | SYL3C can bind to SW480 cells (EpCAM+) with a K d of 97 nM | step2c_acs_v1 | ||||||||||
| 324 | D-TAR RNA | protein | Q9Y5S9 | L-6-4t | 1.0000000000000001e-07 M | -7.0 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23977945 | 10.1021/ja406634g | the K d of the L-aptamer for D-TAR RNA is 100 nM | step2c_acs_v1 | ||||||||||
| 436 | SIRT2 | protein | Q8IXJ6 | Apt 45 | 1.233e-07 M | -6.909 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 310.15 | DNA | FAM | 40200675 | 10.1021/acs.analchem.5c00066 | selected Apt 45 ( K d = 123.3 nM) to fabricate the 'turn-on' fluorescent biosensor | step2c_acs_v1 | ||||||
| 399 | 6'-sialyllactose | protein | Q9Y3R4 | Apt9 | 1.5230000000000003e-07 M | -6.817 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 298.15 | 7.4 | 10 mM PBS (pH 7.4) | DNA | 36700646 | 10.1021/acs.jafc.2c07784 | The ssDNA aptamer Apt9 ( K d = 152.3 nM) with a length of 79 nucleotides (nt) was demonstrated as the optimal aptamer candidate | step2c_acs_v1 | |||||
| 326 | D-TAR RNA | protein | Q9Y5S9 | L-6-4t | 1.6e-07 M | -6.796 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 23977945 | 10.1021/ja406634g | The L-6-4t aptamer has somewhat reduced affinity for D-TAR RNA under the low-salt conditions (K d = 160 nM) | step2c_acs_v1 | ||||||||||
| 369 | Cd2+ | protein | P06729 | probe | 2.2e-07 M | -6.658 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 32618180 | 10.1021/acs.analchem.0c01710 | the disassociation constant ( K D) between Cd 2+ and its aptamer were calculated to be 96 M -1 S -1 , 2.11 × 10 -5 S -1 , and 220 nM, respectively | step2c_acs_v1 | ||||||||||
| 467 | benzovindiflupyr | protein | Apt.BZF01 | 2.2650000000000002e-07 M | -6.645 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | DNA | 41614999 | 10.1021/acs.jafc.5c15044 | corrected KDs of 226.5 nM (Apt.BZF01) | step2c_acs_v1 | |||||||||
| 403 | EpCAM | protein | P16422 | TD05 | 7.92e-07 M | -6.101 | apparent_cellular | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | 36856721 | 10.1021/acsami.2c22820 | TD05's K d value is 792 nM | step2c_acs_v1 | ||||||||||
| 425 | verrucarin A | protein | 14_Ver1 | 2.2e-06 M | -5.658 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.4 | SELEX buffer | DNA | 6-FAM at 5'-end; dabcyl at 3'-end | 39404132 | 10.1021/acs.analchem.4c03307 | The binding test demonstrated that the decrease in fluorescence was correlated with increasing verrucarin A concentration with K D = 2.2 μM. | step2c_acs_v1 | ||||||
| 426 | verrucarin A | protein | Ver1_JYP (C32G mutant) | 2.2999999999999996e-06 M | -5.638 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 7.4 | SELEX buffer | DNA | C32G mutation | 39404132 | 10.1021/acs.analchem.4c03307 | guanine with both functional groups exhibited partially recovered binding activity ( K D = 2.3 μM). | step2c_acs_v1 | ||||||
| 462 | Patulin | protein | PTL-1 | 1.2499999999999999e-05 M | -4.903 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | ITC | 298.15 | 6.0 | selection buffer (10 mM MES, pH 6.0, 150 mM NaCl, 5 mM MgCl2) | DNA | 41473783 | 10.1186/s44280-025-00101-2 | The measured K d from ITC value was 12.5 μM | step2c_acs_v1 | ||||||
| 463 | Patulin | protein | PTL-1 | 1.8399999999999997e-05 M | -4.735 | intrinsic | Kd | Gold | v4 | multi_agent_verified | pending_manual_supp | fluorescence | 6.0 | selection buffer (10 mM MES, pH 6.0, 150 mM NaCl, 5 mM MgCl2) | DNA | 41473783 | 10.1186/s44280-025-00101-2 | yielding an apparent K d of 18.4 μM | step2c_acs_v1 |
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CREATE VIEW v_kd AS
SELECT k.id,
target_name_canonical,
CASE
WHEN target_name_canonical LIKE '%cell%' OR target_name_canonical LIKE '%vesicle%' OR target_name_canonical LIKE '%exosome%' THEN 'cell/EV'
WHEN target_name_canonical LIKE '%BSA%' OR target_name_canonical LIKE '%sLe%' OR target_name_canonical LIKE '%glycan%' OR target_name_canonical LIKE '% Le %' THEN 'glycan/conjugate'
ELSE 'protein'
END AS target_type,
target_uniprot, aptamer_name, aptamer_seq,
(COALESCE(kd_value,'') || CASE WHEN COALESCE(kd_unit,'')!='' THEN ' '||kd_unit ELSE '' END) AS kd_reported,
CAST(NULLIF(kd_log10_molar,'') AS REAL) AS kd_log10_molar,
measurement_class, binding_constant_type, 'Gold' AS tier, k.tier AS source_origin,
CASE
WHEN vh.verdict='confirmed' THEN 'human_verified'
WHEN vh.verdict='corrected' THEN 'human_corrected'
WHEN vh.verdict='rejected' THEN 'human_rejected'
WHEN k.verification_status='agent_verified_L2' THEN 'multi_agent_verified'
WHEN k.verification_status IN ('verified','CONFIRM') THEN 'extraction_verified'
ELSE 'automated'
END AS verification_level,
sequence_status, seq_source, pi_provenance_flag,
assay_method,
CAST(NULLIF(assay_temperature_k,'') AS REAL) AS assay_temperature_k,
CAST(NULLIF(assay_ph,'') AS REAL) AS assay_ph,
assay_buffer, assay_cations, aptamer_chemistry, aptamer_modifications,
source_pmid, doi, verbatim_quote, source_db
FROM kd_measurements k LEFT JOIN verification_human vh ON vh.row_id=k.source_record_id
WHERE LOWER(COALESCE(k.include_in_gold,''))='true';