target_layer1_structure: A0A1B0GX56
This data as json
| target_id | pdb_count_total | pdb_count_detailed | pdb_best_resolution_A | alphafold_mean_pLDDT | alphafold_model_count | emdb_count | has_cryoEM | has_xray | has_NMR | raw_json | recorded_utc |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A0A1B0GX56 | 7 | 7 | 90.69 | 1 | 6 | 1 | 1 | 0 | {"pdb": {"uniprot_id": "A0A1B0GX56", "pdb_count_total": 7, "pdb_count_detailed": 7, "entries": [{"pdb_id": "7RYL", "title": "T cell receptor CO3", "keywords": "IMMUNE SYSTEM", "resolution": 2.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "T cell receptor delta variable 1,T cell receptor alpha chain constant", "length": 209}], "ligands": [{"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "7RYM", "title": "CD1a-endo-gdTCR complex", "keywords": "IMMUNE SYSTEM", "resolution": 3.2, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T cell receptor delta variable 1,T cell receptor alpha chain constant", "length": 209}], "ligands": [{"comp_id": "DI(HYDROXYETHYL)ETHER", "chem_id": "PEG"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "7RYN", "title": "CD1a-sulfatide-gdTCR complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.7, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T cell receptor delta variable 1,T cell receptor alpha chain constant", "length": 209}], "ligands": [{"comp_id": "(15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}", "chem_id": "CIS"}, {"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "DI(HYDROXYETHYL)ETHER", "chem_id": "PEG"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "7RYO", "title": "CD1a-dideoxymycobactin-gdTCR complex", "keywords": "IMMUNE SYSTEM", "resolution": 3.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T cell receptor delta variable 1,T cell receptor alpha chain constant", "length": 209}], "ligands": [{"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "dideoxymycobactin-838", "chem_id": "WGR"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "8JBV", "title": "Extracellular domain of gamma delta TCR", "keywords": "IMMUNE SYSTEM", "resolution": 3.02, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-05-09T00:00:00.000+00:00", "release_date": "2024-05-08T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["M", "m"], "description": "T cell receptor delta variable 1,T cell receptor delta constant", "length": 307}], "ligands": [], "primary_citation": {"title": "Structures of human gamma delta T cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "Nature", "year": 2024, "authors": ["Xin, W.", "Huang, B.", "Chi, X.", "Liu, Y.", "Xu, M.", "Zhang, Y."]}, "related_emdb": ["EMD-36147"]}, {"pdb_id": "8JCB", "title": "Vgamma5 Vdelta1 T cell receptor complex", "keywords": "IMMUNE SYSTEM", "resolution": 9.5, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-05-10T00:00:00.000+00:00", "release_date": "2024-05-08T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["M", "m"], "description": "T cell receptor delta variable 1,T cell receptor delta constant", "length": 307}], "ligands": [], "primary_citation": {"title": "Structures of human gamma delta T cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "Nature", "year": 2024, "authors": ["Xin, W.", "Huang, B.", "Chi, X.", "Liu, Y.", "Xu, M.", "Zhang, Y."]}, "related_emdb": ["EMD-36156", "EMD-36152", "EMD-36153", "EMD-36155"]}, {"pdb_id": "8WXE", "title": "Vgamma5Vdelta1 EH TCR-CD3 complex", "keywords": "IMMUNE SYSTEM", "resolution": 4.0, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-10-28T00:00:00.000+00:00", "release_date": "2024-05-08T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["m"], "description": "Signal peptide,flag tag,T cell receptor delta variable 1,T cell receptor delta constant", "length": 307}], "ligands": [{"comp_id": "CHOLESTEROL", "chem_id": "CLR"}], "primary_citation": {"title": "Structures of human gamma delta T cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "Nature", "year": 2024, "authors": ["Xin, W.", "Huang, B.", "Chi, X.", "Liu, Y.", "Xu, M.", "Zhang, Y."]}, "related_emdb": ["EMD-37904"]}]}, "alphafold": {"uniprot_id": "A0A1B0GX56", "model_count": 1, "models": [{"entryId": "AF-A0A1B0GX56-F1", "uniprotAccession": "A0A1B0GX56", "uniprotDescription": "T cell receptor delta variable 1", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 90.69, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GX56-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GX56-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GX56-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A1B0GX56", "emdb_count": 6, "entries": [{"emdb_id": "EMD-36147", "title": null, "resolution_A": null, "deposit_date": "2023-05-09T00:00:00", "release_date": "2024-05-08T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-36156", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-36152", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-36153", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-36155", "title": null, "resolution_A": null, "deposit_date": "2023-05-10T00:00:00", "release_date": "2024-05-08T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-37904", "title": null, "resolution_A": null, "deposit_date": "2023-10-28T00:00:00", "release_date": "2024-05-08T00:00:00", "method": "electron microscopy"}]}} | 2026-05-27T10:45:01.590372+00:00 |