target_layer1_structure
Data license: CC BY 4.0 · Data source: apt-scout automated curation pipeline (E. Dohi, NCNP) — values harvested from public databases; raw source stored per target
7,197 rows
This data as json, CSV (advanced)
Suggested facets: alphafold_model_count, emdb_count, has_cryoEM, has_xray, has_NMR, recorded_utc (date)
| target_id ▼ | pdb_count_total | pdb_count_detailed | pdb_best_resolution_A | alphafold_mean_pLDDT | alphafold_model_count | emdb_count | has_cryoEM | has_xray | has_NMR | raw_json | recorded_utc |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A0A075B5G3 | 1 | 1 | 82.75 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A075B5G3", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "4OV6", "title": "Crystal structure of PCSK9(53-451) with Adnectin", "keywords": "HYDROLASE/PROTEIN BINDING", "resolution": 2.69, "method": "X-RAY DIFFRACTION", "deposit_date": "2014-02-20T00:00:00.000+00:00", "release_date": "2014-07-02T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["F", "G"], "description": "Adnectin", "length": 99}], "ligands": [{"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "TETRAETHYLENE GLYCOL", "chem_id": "PG4"}], "primary_citation": {"title": "Pharmacologic Profile of the Adnectin BMS-962476, a Small Protein Biologic Alternative to PCSK9 Antibodies for Low-Density Lipoprotein Lowering.", "doi": null, "pmid": null, "journal": "J Pharmacol Exp Ther", "year": 2014, "authors": ["Mitchell, T.", "Chao, G.", "Sitkoff, D.", "Lo, F.", "Monshizadegan, H.", "Meyers, D."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A075B5G3", "model_count": 1, "models": [{"entryId": "AF-A0A075B5G3-F1", "uniprotAccession": "A0A075B5G3", "uniprotDescription": "Adnectin", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 82.75, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A075B5G3-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A075B5G3-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A075B5G3-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A075B5G3", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:01.877649+00:00 | |
| A0A075B6T6 | 8 | 8 | 93.19 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A075B6T6", "pdb_count_total": 8, "pdb_count_detailed": 8, "entries": [{"pdb_id": "1AO7", "title": "COMPLEX BETWEEN HUMAN T-CELL RECEPTOR, VIRAL PEPTIDE (TAX), AND HLA-A 0201", "keywords": "COMPLEX (MHC/VIRAL PEPTIDE/RECEPTOR)", "resolution": 2.6, "method": "X-RAY DIFFRACTION", "deposit_date": "1997-07-21T00:00:00.000+00:00", "release_date": "1997-09-17T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T CELL RECEPTOR ALPHA", "length": 204}], "ligands": [{"comp_id": "ETHYL MERCURY ION", "chem_id": "EMC"}], "primary_citation": {"title": "Structure of the complex between human T-cell receptor, viral peptide and HLA-A2.", "doi": null, "pmid": null, "journal": "Nature", "year": 1996, "authors": ["Garboczi, D.N.", "Ghosh, P.", "Utz, U.", "Fan, Q.R.", "Biddison, W.E.", "Wiley, D.C."]}, "related_emdb": []}, {"pdb_id": "4ZDH", "title": "Crystal structure of JKA6 TCR", "keywords": "IMMUNE SYSTEM", "resolution": 2.0984, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-04-17T00:00:00.000+00:00", "release_date": "2016-05-04T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "Alpha chain of A6 T-cell receptor,T-cell receptor alpha chain C region", "length": 201}], "ligands": [], "primary_citation": {"title": "Crystal structure of JKA6 TCR", "doi": null, "pmid": null, "journal": "To be published", "year": null, "authors": ["Singh, N.K.", "Hossain, M.", "Baker, B.M."]}, "related_emdb": []}, {"pdb_id": "5E9D", "title": "RD-1 Mart-1 High bound to Mart-1 decameric peptide (ELA) in complex with HLA-A2", "keywords": "PROTEIN BINDING", "resolution": 2.51, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-10-15T00:00:00.000+00:00", "release_date": "2016-06-08T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D", "I"], "description": "A6-TCR Valpha", "length": 129}], "ligands": [], "primary_citation": {"title": "An Engineered Switch in T Cell Receptor Specificity Leads to an Unusual but Functio… | 2026-05-27T10:45:01.499246+00:00 | |
| A0A087X1C5 | 0 | 0 | 91.0 | 1 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0A087X1C5", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0A087X1C5", "model_count": 1, "models": [{"entryId": "AF-A0A087X1C5-F1", "uniprotAccession": "A0A087X1C5", "uniprotDescription": "Cytochrome P450 2D7", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 91.0, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X1C5-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X1C5-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X1C5-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A087X1C5", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:03.013340+00:00 | |
| A0A087X2I1 | 0 | 0 | 81.75 | 1 | 0 | 0 | 0 | 0 | {"pdb": {}, "alphafold": {"uniprot_id": "A0A087X2I1", "model_count": 1, "models": [{"entryId": "AF-A0A087X2I1-F1", "uniprotAccession": "A0A087X2I1", "uniprotDescription": "26S proteasome regulatory subunit 10B", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 81.75, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X2I1-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X2I1-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A087X2I1-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A087X2I1", "_note": "no PDB data available, cannot derive EMDB"}} | 2026-05-27T10:45:01.919384+00:00 | |
| A0A0A6YX08 | 4 | 4 | 0 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0A6YX08", "pdb_count_total": 4, "pdb_count_detailed": 4, "entries": [{"pdb_id": "4MVB", "title": "42F3 pCPB7/H-2Ld Complex", "keywords": "IMMUNE SYSTEM", "resolution": 3.088, "method": "X-RAY DIFFRACTION", "deposit_date": "2013-09-23T00:00:00.000+00:00", "release_date": "2015-08-19T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "42F3 beta VmCh", "length": 243}], "ligands": [], "primary_citation": {"title": "Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.", "doi": null, "pmid": null, "journal": "Nat Immunol", "year": 2016, "authors": ["Adams, J.J.", "Narayanan, S.", "Birnbaum, M.E.", "Sidhu, S.S.", "Blevins, S.J.", "Gee, M.H."]}, "related_emdb": []}, {"pdb_id": "4MXQ", "title": "42F3 TCR pCPC5/H-2Ld Complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.596, "method": "X-RAY DIFFRACTION", "deposit_date": "2013-09-26T00:00:00.000+00:00", "release_date": "2015-08-19T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "42F3 beta VmVh chimera", "length": 243}], "ligands": [], "primary_citation": {"title": "Structural interplay between germline interactions and adaptive recognition determines the bandwidth of TCR-peptide-MHC cross-reactivity.", "doi": null, "pmid": null, "journal": "Nat Immunol", "year": 2016, "authors": ["Adams, J.J.", "Narayanan, S.", "Birnbaum, M.E.", "Sidhu, S.S.", "Blevins, S.J.", "Gee, M.H."]}, "related_emdb": []}, {"pdb_id": "4N0C", "title": "42F3 TCR pCPE3/H-2Ld complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.9, "method": "X-RAY DIFFRACTION", "deposit_date": "2013-10-01T00:00:00.000+00:00", "release_date": "2015-08-19T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D", "H"], "description": "42F3 VmCh beta", "length": 243}], "ligands": [], "primary_citation": {"title": "Structural interplay between germline interactions and adaptive recognition determines the b… | 2026-05-27T10:45:02.450563+00:00 | ||
| A0A0B4J1J9 | 16 | 16 | 90.62 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0B4J1J9", "pdb_count_total": 16, "pdb_count_detailed": 16, "entries": [{"pdb_id": "4Y16", "title": "Crystal structure of the mCD1d/NC-aGC/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.6, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-02-06T00:00:00.000+00:00", "release_date": "2015-06-03T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["C"], "description": "Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)", "length": 209}], "ligands": [{"comp_id": "N-[(2S,3S,4R)-3,4-dihydroxy-1-{[6-O-(naphthalen-1-ylcarbamoyl)-alpha-D-galactopy", "chem_id": "48G"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}], "primary_citation": {"title": "Lipid and Carbohydrate Modifications of alpha-Galactosylceramide Differently Influence Mouse and Human Type I Natural Killer T Cell Activation.", "doi": null, "pmid": null, "journal": "J Biological Chem", "year": 2015, "authors": ["Birkholz, A.", "Nemcovic, M.", "Yu, E.D.", "Girardi, E.", "Wang, J.", "Khurana, A."]}, "related_emdb": []}, {"pdb_id": "4Y2D", "title": "Crystal structure of the mCD1d/7DW8-5/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 3.05, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-02-09T00:00:00.000+00:00", "release_date": "2015-05-27T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["C", "G"], "description": "Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)", "length": 209}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "11-(4-fluorophenyl)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyo", "chem_id": "7DW"}, {"comp_id": "alpha-L-fucopyranose", "chem_id": "FUC"}], "primary_citation": {"title": "Structural modifications of alphaGalCer in both lipid and carbohydrate moiety influence activation of murine and human iNKT cells", "doi": null, "pmid": null, "journal": "To be published", … | 2026-05-27T10:45:01.587525+00:00 | |
| A0A0B4J271 | 12 | 12 | 92.56 | 1 | 4 | 1 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0B4J271", "pdb_count_total": 12, "pdb_count_detailed": 12, "entries": [{"pdb_id": "4WWK", "title": "Crystal structure of human TCR Alpha Chain-TRAV12-3, Beta Chain-TRBV6-5, Antigen-presenting molecule CD1d, and Beta-2-microglobulin", "keywords": "IMMUNE SYSTEM", "resolution": 3.1, "method": "X-RAY DIFFRACTION", "deposit_date": "2014-11-11T00:00:00.000+00:00", "release_date": "2016-02-03T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "TCR Alpha Chain-TRAV12-3", "length": 209}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "(15Z)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]", "chem_id": "JLS"}], "primary_citation": {"title": "Atypical natural killer T-cell receptor recognition of CD1d-lipid antigens.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2016, "authors": ["Le Nours, J.", "Praveena, T.", "Pellicci, D.G.", "Gherardin, N.A.", "Ross, F.J.", "Lim, R.T."]}, "related_emdb": []}, {"pdb_id": "5C07", "title": "1E6 TCR in complex with HLA-A02 carrying YQFGPDFPIA", "keywords": "IMMUNE SYSTEM", "resolution": 2.11, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-06-12T00:00:00.000+00:00", "release_date": "2016-05-04T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D", "I"], "description": "1E6 TCR Alpha Chain", "length": 199}], "ligands": [{"comp_id": "SULFATE ION", "chem_id": "SO4"}, {"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.", "doi": null, "pmid": null, "journal": "J Clin Invest", "year": 2016, "authors": ["Cole, D.K.", "Bulek, A.M.", "Dolton, G.", "Schauenberg, A.J.", "Szomolay, B.", "Rittase, W."]}, "related_emdb": []}, {"pdb_id": "5C08", "title": "1E6 TCR in Complex with HLA-A0e carrying RQWGPDPAAV", "keywords": "IMMUNE SYSTEM", "resoluti… | 2026-05-27T10:45:01.537684+00:00 | |
| A0A0B4J2E0 | 7 | 7 | 89.5 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0B4J2E0", "pdb_count_total": 7, "pdb_count_detailed": 7, "entries": [{"pdb_id": "5C07", "title": "1E6 TCR in complex with HLA-A02 carrying YQFGPDFPIA", "keywords": "IMMUNE SYSTEM", "resolution": 2.11, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-06-12T00:00:00.000+00:00", "release_date": "2016-05-04T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E", "J"], "description": "1E6 TCR Beta Chain", "length": 246}], "ligands": [{"comp_id": "SULFATE ION", "chem_id": "SO4"}, {"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.", "doi": null, "pmid": null, "journal": "J Clin Invest", "year": 2016, "authors": ["Cole, D.K.", "Bulek, A.M.", "Dolton, G.", "Schauenberg, A.J.", "Szomolay, B.", "Rittase, W."]}, "related_emdb": []}, {"pdb_id": "5C08", "title": "1E6 TCR in Complex with HLA-A0e carrying RQWGPDPAAV", "keywords": "IMMUNE SYSTEM", "resolution": 2.332, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-06-12T00:00:00.000+00:00", "release_date": "2016-05-04T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E", "J"], "description": "1E6 TCR Beta Chain", "length": 245}], "ligands": [{"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Hotspot autoimmune T cell receptor binding underlies pathogen and insulin peptide cross-reactivity.", "doi": null, "pmid": null, "journal": "J Clin Invest", "year": 2016, "authors": ["Cole, D.K.", "Bulek, A.M.", "Dolton, G.", "Schauenberg, A.J.", "Szomolay, B.", "Rittase, W."]}, "related_emdb": []}, {"pdb_id": "5C09", "title": "HLA class I histocompatibility antigen", "keywords": "IMMUNE SYSTEM", "resolution": 2.475, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-06-12T00:00:00.000+00:00", "release_date": "2016-05-04T0… | 2026-05-27T10:45:01.641569+00:00 | |
| A0A0B4J2F0 | 0 | 0 | 86.06 | 1 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0A0B4J2F0", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0A0B4J2F0", "model_count": 1, "models": [{"entryId": "AF-A0A0B4J2F0-F1", "uniprotAccession": "A0A0B4J2F0", "uniprotDescription": "Protein PIGBOS1", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 86.06, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0B4J2F0-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0B4J2F0-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0B4J2F0-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A0B4J2F0", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:03.013481+00:00 | |
| A0A0C4DH28 | 4 | 4 | 84.06 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0C4DH28", "pdb_count_total": 4, "pdb_count_detailed": 4, "entries": [{"pdb_id": "7RYL", "title": "T cell receptor CO3", "keywords": "IMMUNE SYSTEM", "resolution": 2.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["C"], "description": "T cell receptor gamma variable 4,T cell receptor beta constant 1", "length": 248}], "ligands": [{"comp_id": "1,2-ETHANEDIOL", "chem_id": "EDO"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "7RYM", "title": "CD1a-endo-gdTCR complex", "keywords": "IMMUNE SYSTEM", "resolution": 3.2, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["C"], "description": "T cell receptor gamma variable 4,T cell receptor beta constant 1", "length": 248}], "ligands": [{"comp_id": "DI(HYDROXYETHYL)ETHER", "chem_id": "PEG"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}], "primary_citation": {"title": "Atypical sideways recognition of CD1a by autoreactive gamma delta T cell receptors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wegrecki, M.", "Ocampo, T.A.", "Gunasinghe, S.D.", "von Borstel, A.", "Tin, S.Y.", "Reijneveld, J.F."]}, "related_emdb": []}, {"pdb_id": "7RYN", "title": "CD1a-sulfatide-gdTCR complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.7, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-08-25T00:00:00.000+00:00", "release_date": "2022-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["C"], "description":… | 2026-05-27T10:45:01.831224+00:00 | |
| A0A0C5B5G6 | 0 | 0 | 72.06 | 1 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0A0C5B5G6", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0A0C5B5G6", "model_count": 1, "models": [{"entryId": "AF-A0A0C5B5G6-F1", "uniprotAccession": "A0A0C5B5G6", "uniprotDescription": "Mitochondrial-derived peptide MOTS-c", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 72.06, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0C5B5G6-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0C5B5G6-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0C5B5G6-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A0C5B5G6", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:02.465871+00:00 | |
| A0A0E3EAY4 | 2 | 2 | 0 | 2 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A0E3EAY4", "pdb_count_total": 2, "pdb_count_detailed": 2, "entries": [{"pdb_id": "8GP5", "title": "Structure of X18 UFO protomer in complex with F6 Fab VHVL domain", "keywords": "VIRAL PROTEIN", "resolution": 4.05, "method": "ELECTRON MICROSCOPY", "deposit_date": "2022-08-25T00:00:00.000+00:00", "release_date": "2023-08-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["X"], "description": "X18 UFO Env protomer", "length": 622}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}], "primary_citation": {"title": "Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2023, "authors": ["Niu, J.", "Wang, Q.", "Zhao, W.", "Meng, B.", "Xu, Y.", "Zhang, X."]}, "related_emdb": ["EMD-34190"]}, {"pdb_id": "8GPG", "title": "HIV-1 Env X18 UFO in complex with F6 Fab", "keywords": "VIRAL PROTEIN", "resolution": 4.1, "method": "ELECTRON MICROSCOPY", "deposit_date": "2022-08-26T00:00:00.000+00:00", "release_date": "2023-08-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["X", "Y", "Z"], "description": "HIV-1 Env X18 UFO", "length": 622}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}], "primary_citation": {"title": "Structures and immune recognition of Env trimers from two Asia prevalent HIV-1 CRFs.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2023, "authors": ["Niu, J.", "Wang, Q.", "Zhao, W.", "Meng, B.", "Xu, Y.", "Zhang, X."]}, "related_emdb": ["EMD-34190", "EMD-34192"]}]}, "alphafold": {"uniprot_id": "A0A0E3EAY4", "model_count": 0, "_note": "no AlphaFold prediction"}, "emdb": {"uniprot_id": "A0A0E3EAY4", "emdb_count": 2, "entries": [{"emdb_id": "EMD-34190", "title": null, "resolution_A": null, "deposit_date": "2022-08-25T00:00:00", "release_date": "2023-08-09T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-34192", "_error": "'list' object has no attri… | 2026-05-27T10:45:02.453558+00:00 | ||
| A0A0G2JG46 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0G2JG46", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "4ZAK", "title": "Crystal structure of the mCD1d/DB06-1/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.824, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-04-13T00:00:00.000+00:00", "release_date": "2015-07-01T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["C"], "description": "Protein Trav11,Va14Ja18/Vb8.2,Human nkt tcr alpha chain", "length": 209}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexaco", "chem_id": "4LX"}], "primary_citation": {"title": "A Novel Glycolipid Antigen for NKT Cells That Preferentially Induces IFN-gamma Production.", "doi": null, "pmid": null, "journal": "J Immunol", "year": 2015, "authors": ["Birkholz, A.M.", "Girardi, E.", "Wingender, G.", "Khurana, A.", "Wang, J.", "Zhao, M."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A0G2JG46", "model_count": 0, "_note": "no AlphaFold prediction"}, "emdb": {"uniprot_id": "A0A0G2JG46", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:02.451687+00:00 | ||
| A0A0G2LB96 | 4 | 4 | 91.31 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0G2LB96", "pdb_count_total": 4, "pdb_count_detailed": 4, "entries": [{"pdb_id": "3PQY", "title": "Crystal Structure of 6218 TCR in complex with the H2Db-PA224", "keywords": "IMMUNE SYSTEM", "resolution": 3.192, "method": "X-RAY DIFFRACTION", "deposit_date": "2010-11-28T00:00:00.000+00:00", "release_date": "2011-05-18T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E", "J", "O", "T"], "description": "T cell receptor beta, variable 29,Human nkt tcr beta chain", "length": 240}], "ligands": [], "primary_citation": {"title": "Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses", "doi": null, "pmid": null, "journal": "Proc Natl Acad Sci U S A", "year": 2011, "authors": ["Day, E.B.", "Guillonneau, C.", "Gras, S.", "La Gruta, N.L.", "Vignali, D.A.A.", "Doherty, P.C."]}, "related_emdb": []}, {"pdb_id": "7N4K", "title": "6218 TCR in complex with H2-Db PA 224", "keywords": "IMMUNE SYSTEM", "resolution": 1.85, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-06-04T00:00:00.000+00:00", "release_date": "2022-07-20T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "Fusion protein of T cell receptor beta, variable 29 and Human nkt tcr beta chain", "length": 240}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}], "primary_citation": {"title": "Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Szeto, C.", "Zareie, P.", "Wirasinha, R.C.", "Zhang, J.B.", "Nguyen, A.T.", "Riboldi-Tunnicliffe, A."]}, "related_emdb": []}, {"pdb_id": "7N5C", "title": "6218 TCR in complex with H2Db PA with an engineered TCR-pMHC disulfide bond", "keywords": "IMMUNE SYSTEM", "resolution": 1.87, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-06-05T00:00:00.000+00:00", "release_date": "2022-07-20T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "… | 2026-05-27T10:45:01.581089+00:00 | |
| A0A0J9YX06 | 2 | 2 | 0 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0J9YX06", "pdb_count_total": 2, "pdb_count_detailed": 2, "entries": [{"pdb_id": "7NDQ", "title": "Gag:02 TCR in complex with HLA-E.", "keywords": "IMMUNE SYSTEM", "resolution": 2.551, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-02-02T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["EEE"], "description": "T cell receptor beta variable 7-9,M1-specific T cell receptor beta chain,T cell receptor beta variable 7-9,M1-specific T cell receptor beta chain,T cell receptor beta variable 7-9,M1-specific T cell receptor beta chain", "length": 244}], "ligands": [], "primary_citation": {"title": "Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.", "doi": null, "pmid": null, "journal": "Eur J Immunol", "year": 2022, "authors": ["Barber, C.", "De Souza, V.A.", "Paterson, R.L.", "Martin-Urdiroz, M.", "Mulakkal, N.C.", "Srikannathasan, V."]}, "related_emdb": []}, {"pdb_id": "7NDU", "title": "Gag:02 TCR in complex with HLA-E featuring a non-natural amino acid", "keywords": "IMMUNE SYSTEM", "resolution": 2.9, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-02-02T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["EEE"], "description": "T cell receptor beta variable 7-9,T cell receptor beta joining 1-2,Human nkt tcr beta chain", "length": 244}], "ligands": [], "primary_citation": {"title": "Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.", "doi": null, "pmid": null, "journal": "Eur J Immunol", "year": 2022, "authors": ["Barber, C.", "De Souza, V.A.", "Paterson, R.L.", "Martin-Urdiroz, M.", "Mulakkal, N.C.", "Srikannathasan, V."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A0J9YX06", "model_count": 0, "_note": "no AlphaFold prediction"}, "emdb": {"uniprot_id": "A0… | 2026-05-27T10:45:02.452220+00:00 | ||
| A0A0K0K1A5 | 17 | 17 | 91.88 | 1 | 0 | 1 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0K0K1A5", "pdb_count_total": 17, "pdb_count_detailed": 17, "entries": [{"pdb_id": "1BD2", "title": "COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC CLASS I MOLECULE HLA-A 0201", "keywords": "COMPLEX (MHC/VIRAL PEPTIDE/RECEPTOR)", "resolution": 2.5, "method": "X-RAY DIFFRACTION", "deposit_date": "1998-05-12T00:00:00.000+00:00", "release_date": "1998-08-19T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "T CELL RECEPTOR BETA", "length": 244}], "ligands": [], "primary_citation": {"title": "Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids.", "doi": null, "pmid": null, "journal": "Immunity", "year": 1998, "authors": ["Ding, Y.H.", "Smith, K.J.", "Garboczi, D.N.", "Utz, U.", "Biddison, W.E.", "Wiley, D.C."]}, "related_emdb": []}, {"pdb_id": "2BNQ", "title": "Structural and kinetic basis for heightened immunogenicity of T cell vaccines", "keywords": "IMMUNE SYSTEM/RECEPTOR", "resolution": 1.7, "method": "X-RAY DIFFRACTION", "deposit_date": "2005-03-31T00:00:00.000+00:00", "release_date": "2005-05-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "T-CELL RECEPTOR BETA CHAIN C REGION", "length": 241}], "ligands": [], "primary_citation": {"title": "Structural and Kinetic Basis for Heightened Immunogenicity of T Cell Vaccines", "doi": null, "pmid": null, "journal": "J Exp Medicine", "year": 2005, "authors": ["Chen, J.-L.", "Stewart-Jones, G.", "Bossi, G.", "Lissin, N.M.", "Wooldridge, L.", "Choi, E.M.L."]}, "related_emdb": []}, {"pdb_id": "2BNR", "title": "Structural and kinetic basis for heightened immunogenicity of T cell vaccines", "keywords": "IMMUNE SYSTEM/RECEPTOR", "resolution": 1.9, "method": "X-RAY DIFFRACTION", "deposit_date": "2005-03-31T00:00:00.000+00:00", "release_date": "2005-05-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "T-CELL RECEPTOR BETA… | 2026-05-27T10:45:01.545636+00:00 | |
| A0A0K2S4Q6 | 0 | 0 | 72.94 | 2 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0A0K2S4Q6", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0A0K2S4Q6", "model_count": 2, "models": [{"entryId": "AF-A0A0K2S4Q6-F1", "uniprotAccession": "A0A0K2S4Q6", "uniprotDescription": "Protein CD300H", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 72.94, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0A0K2S4Q6-2-F1", "uniprotAccession": "A0A0K2S4Q6-2", "uniprotDescription": "Protein CD300H", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 76.81, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-2-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-2-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A0K2S4Q6-2-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A0K2S4Q6", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:03.013654+00:00 | |
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| A0A0U5Q247 | 3 | 3 | 85.12 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A0U5Q247", "pdb_count_total": 3, "pdb_count_detailed": 3, "entries": [{"pdb_id": "5KS9", "title": "Bel502-DQ8-glia-alpha1 complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.55, "method": "X-RAY DIFFRACTION", "deposit_date": "2016-07-08T00:00:00.000+00:00", "release_date": "2016-09-21T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["B", "D"], "description": "HLA class II histocompatibility antigen, DQ beta 1 chain", "length": 230}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "CALCIUM ION", "chem_id": "CA"}], "primary_citation": {"title": "Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.", "doi": null, "pmid": null, "journal": "Structure", "year": 2016, "authors": ["Petersen, J.", "Kooy-Winkelaar, Y.", "Loh, K.L.", "Tran, M.", "van Bergen, J.", "Koning, F."]}, "related_emdb": []}, {"pdb_id": "5KSA", "title": "Bel602-DQ8.5-glia-gamma1 complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2016-07-08T00:00:00.000+00:00", "release_date": "2016-09-21T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["B"], "description": "HLA class II histocompatibility antigen, DQ beta 1 chain", "length": 225}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "CALCIUM ION", "chem_id": "CA"}], "primary_citation": {"title": "Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution.", "doi": null, "pmid": null, "journal": "Structure", "year": 2016, "authors": ["Petersen, J.", "Kooy-Winkelaar, Y.", "Loh, K.L.", "Tran, M.", "van Bergen, J.", "Koning, F."]}, "related_emdb": []}, {"pdb_id": "5KSB", "title": "T15-DQ8.5-glia-gamma1 complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.9, "method": "X-RAY DIFFRACTION", "deposit_date": "2016-07-08T00:00:00.000+00:00", "release_date": "2016… | 2026-05-27T10:45:01.789465+00:00 | |
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| A0A1B0GXE1 | 1 | 1 | 89.81 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A1B0GXE1", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "6DKP", "title": "The complex among DMF5(alpha-D26Y, alpha-Y50A,beta-L98W) TCR, human Class I MHC HLA-A2 and MART-1(26-35)(A27L) peptide", "keywords": "IMMUNE SYSTEM", "resolution": 2.966, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-05-30T00:00:00.000+00:00", "release_date": "2019-04-10T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "DMF5 T-cell Receptor Beta Chain fusion", "length": 243}], "ligands": [], "primary_citation": {"title": "Improving T Cell Receptor On-Target Specificity via Structure-Guided Design.", "doi": null, "pmid": null, "journal": "Mol Ther", "year": 2019, "authors": ["Hellman, L.M.", "Foley, K.C.", "Singh, N.K.", "Alonso, J.A.", "Riley, T.P.", "Devlin, J.R."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A1B0GXE1", "model_count": 1, "models": [{"entryId": "AF-A0A1B0GXE1-F1", "uniprotAccession": "A0A1B0GXE1", "uniprotDescription": "T cell receptor beta variable 6-4", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 89.81, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GXE1-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GXE1-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A1B0GXE1-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A1B0GXE1", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:01.611394+00:00 | |
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| A0A3B3ITX3 | 1 | 1 | 53.88 | 1 | 1 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A3B3ITX3", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "6OIJ", "title": "Muscarinic acetylcholine receptor 1-G11 protein complex", "keywords": "SIGNALING PROTEIN", "resolution": 3.3, "method": "ELECTRON MICROSCOPY", "deposit_date": "2019-04-09T00:00:00.000+00:00", "release_date": "2019-05-08T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein subunit alpha-11", "length": 353}], "ligands": [{"comp_id": "4-(4,5-dihydro-1,2-oxazol-3-yloxy)-N,N,N-trimethylbut-2-yn-1-aminium", "chem_id": "IXO"}, {"comp_id": "CHOLESTEROL HEMISUCCINATE", "chem_id": "Y01"}], "primary_citation": {"title": "Structures of the M1 and M2 muscarinic acetylcholine receptor/G-protein complexes.", "doi": null, "pmid": null, "journal": "Science", "year": 2019, "authors": ["Maeda, S.", "Qu, Q.", "Robertson, M.J.", "Skiniotis, G.", "Kobilka, B.K."]}, "related_emdb": ["EMD-20078"]}]}, "alphafold": {"uniprot_id": "A0A3B3ITX3", "model_count": 1, "models": [{"entryId": "AF-A0A3B3ITX3-F1", "uniprotAccession": "A0A3B3ITX3", "uniprotDescription": "G protein subunit alpha i1", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 53.88, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A3B3ITX3-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A3B3ITX3-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A3B3ITX3-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A3B3ITX3", "emdb_count": 1, "entries": [{"emdb_id": "EMD-20078", "title": null, "resolution_A": null, "deposit_date": "2019-04-09T00:00:00", "release_date": "2019-05-01T00:00:00", "method": "electron microscopy"}]}} | 2026-05-27T10:45:02.418612+00:00 | |
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| A0A5B9 | 62 | 30 | 94.0 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A5B9", "pdb_count_total": 62, "pdb_count_detailed": 30, "entries": [{"pdb_id": "1BD2", "title": "COMPLEX BETWEEN HUMAN T-CELL RECEPTOR B7, VIRAL PEPTIDE (TAX) AND MHC CLASS I MOLECULE HLA-A 0201", "keywords": "COMPLEX (MHC/VIRAL PEPTIDE/RECEPTOR)", "resolution": 2.5, "method": "X-RAY DIFFRACTION", "deposit_date": "1998-05-12T00:00:00.000+00:00", "release_date": "1998-08-19T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "5", "chains": ["E"], "description": "T CELL RECEPTOR BETA", "length": 244}], "ligands": [], "primary_citation": {"title": "Two human T cell receptors bind in a similar diagonal mode to the HLA-A2/Tax peptide complex using different TCR amino acids.", "doi": null, "pmid": null, "journal": "Immunity", "year": 1998, "authors": ["Ding, Y.H.", "Smith, K.J.", "Garboczi, D.N.", "Utz, U.", "Biddison, W.E.", "Wiley, D.C."]}, "related_emdb": []}, {"pdb_id": "2EYR", "title": "A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition", "keywords": "IMMUNE SYSTEM", "resolution": 2.4, "method": "X-RAY DIFFRACTION", "deposit_date": "2005-11-09T00:00:00.000+00:00", "release_date": "2006-03-21T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["B"], "description": "NKT12", "length": 241}], "ligands": [], "primary_citation": {"title": "A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition", "doi": null, "pmid": null, "journal": "J Exp Medicine", "year": 2006, "authors": ["Kjer-Nielsen, L.", "Borg, N.A.", "Pellicci, D.G.", "Beddoe, T.", "Kostenko, L.", "Clements, C.S."]}, "related_emdb": []}, {"pdb_id": "2EYS", "title": "A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition", "keywords": "IMMUNE SYSTEM", "resolution": 2.21, "method": "X-RAY DIFFRACTION", "deposit_date": "2005-11-09T00:00:00.000+00:00", "release_date": "2006-03-21T… | 2026-05-27T10:45:01.478443+00:00 | |
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| A0A5H2UYS3 | 20 | 20 | 85.25 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A5H2UYS3", "pdb_count_total": 20, "pdb_count_detailed": 20, "entries": [{"pdb_id": "6XQA", "title": "Crystal Structure of HLA A*2402 in complex with TYQWVLKNL, an 9-mer epitope from Influenza B virus", "keywords": "IMMUNE SYSTEM", "resolution": 2.16, "method": "X-RAY DIFFRACTION", "deposit_date": "2020-07-09T00:00:00.000+00:00", "release_date": "2021-04-14T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "D"], "description": "MHC class I antigen", "length": 278}], "ligands": [{"comp_id": "MAGNESIUM ION", "chem_id": "MG"}], "primary_citation": {"title": "CD8 + T cell landscape in Indigenous and non-Indigenous people restricted by influenza mortality-associated HLA-A*24:02 allomorph.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2021, "authors": ["Hensen, L.", "Illing, P.T.", "Bridie Clemens, E.", "Nguyen, T.H.O.", "Koutsakos, M.", "van de Sandt, C.E."]}, "related_emdb": []}, {"pdb_id": "7EJL", "title": "Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-2) spike protein", "keywords": "IMMUNE SYSTEM", "resolution": 1.89, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-04-02T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "MHC class I antigen", "length": 281}], "ligands": [], "primary_citation": {"title": "Identification of TCR repertoires in functionally competent cytotoxic T cells cross-reactive to SARS-CoV-2.", "doi": null, "pmid": null, "journal": "Commun Biol", "year": 2021, "authors": ["Shimizu, K.", "Iyoda, T.", "Sanpei, A.", "Nakazato, H.", "Okada, M.", "Ueda, S."]}, "related_emdb": []}, {"pdb_id": "7EJM", "title": "Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-229E) spike protein", "keywords": "IMMUNE SYSTEM", "resolution": 1.71, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-04-02T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"… | 2026-05-27T10:45:01.785188+00:00 | |
| A0A5P9VSM6 | 6 | 6 | 0 | 16 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A5P9VSM6", "pdb_count_total": 6, "pdb_count_detailed": 6, "entries": [{"pdb_id": "8TW6", "title": "TCR in nanodisc ND-II", "keywords": "IMMUNE SYSTEM", "resolution": 3.1, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-08-20T00:00:00.000+00:00", "release_date": "2024-10-02T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["X", "Y"], "description": "T-cell surface glycoprotein CD3 zeta chain, GFP fusion protein,GFP", "length": 412}], "ligands": [{"comp_id": "CHOLESTEROL", "chem_id": "CLR"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}], "primary_citation": {"title": "The resting and ligand-bound states of the membrane-embedded human T-cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "bioRxiv", "year": 2024, "authors": ["Notti, R.Q.", "Yi, F.", "Heissel, S.", "Bush, M.W.", "Molvi, Z.", "Das, P."]}, "related_emdb": ["EMD-41660"]}, {"pdb_id": "8YH0", "title": "A3R-Gi complex bound to NECA", "keywords": "SIGNALING PROTEIN", "resolution": 2.86, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["R"], "description": "HA tag,Adenosine receptor A3,LgBiT,eGFP chimera", "length": 794}], "ligands": [{"comp_id": "N-ETHYL-5'-CARBOXAMIDO ADENOSINE", "chem_id": "NEC"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39278", "EMD-61664", "EMD-61666"]}, {"pdb_id": "8YH2", "title": "A3R-Gi complex bound to adenosine", "keywords": "SIGNALING PROTEIN", "resolution": 3.27, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["… | 2026-05-27T10:45:02.455383+00:00 | ||
| A0A5P9VSM8 | 7 | 7 | 0 | 7 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A5P9VSM8", "pdb_count_total": 7, "pdb_count_detailed": 7, "entries": [{"pdb_id": "8TW4", "title": "TCR in nanodisc ND-I", "keywords": "IMMUNE SYSTEM", "resolution": 3.3, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-08-20T00:00:00.000+00:00", "release_date": "2024-10-02T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "6", "chains": ["X", "Y"], "description": "T-cell surface glycoprotein CD3 zeta chain,RNA-directed RNA polymerase L", "length": 412}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "CHOLESTEROL", "chem_id": "CLR"}], "primary_citation": {"title": "The resting and ligand-bound states of the membrane-embedded human T-cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "bioRxiv", "year": 2024, "authors": ["Notti, R.Q.", "Yi, F.", "Heissel, S.", "Bush, M.W.", "Molvi, Z.", "Das, P."]}, "related_emdb": ["EMD-41658"]}, {"pdb_id": "8V38", "title": "Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1)", "keywords": "MEMBRANE PROTEIN", "resolution": 3.5, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-11-27T00:00:00.000+00:00", "release_date": "2024-06-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "B"], "description": "SID1 transmembrane family member 1,RNA-directed RNA polymerase L", "length": 1097}], "ligands": [], "primary_citation": {"title": "Structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) reveals the conformational flexibility of its lipid binding domain.", "doi": null, "pmid": null, "journal": "Life Sci Alliance", "year": 2024, "authors": ["Navratna, V.", "Kumar, A.", "Rana, J.K.", "Mosalaganti, S."]}, "related_emdb": ["EMD-42943"]}, {"pdb_id": "9OQP", "title": "Human pannexin 1 channel with 1mM mefloquine", "keywords": "TRANSPORT PROTEIN", "resolution": 2.62, "method": "ELECTRON MICROSCOPY", "deposit_date": "2025-05-21T00:00:00.000+00:00", "release_date": "2025-12-24T00:00:00.000+00:00", "my_un… | 2026-05-27T10:45:02.454077+00:00 | ||
| A0A678ZMW1 | 2 | 2 | 86.31 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A678ZMW1", "pdb_count_total": 2, "pdb_count_detailed": 2, "entries": [{"pdb_id": "7X1B", "title": "Crystal structure of peptide KAGQVVTI in complex with HLA-B5801", "keywords": "IMMUNE SYSTEM", "resolution": 1.399, "method": "X-RAY DIFFRACTION", "deposit_date": "2022-02-23T00:00:00.000+00:00", "release_date": "2023-05-03T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "HLA-B", "length": 277}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.", "doi": null, "pmid": null, "journal": "Sci Rep", "year": 2023, "authors": ["Huan, X.", "Zhuo, N.", "Lee, H.Y.", "Ren, E.C."]}, "related_emdb": []}, {"pdb_id": "7X1C", "title": "Crystal structure of peptide VSFIEFVI in complex with HLA-B5801", "keywords": "IMMUNE SYSTEM", "resolution": 1.409, "method": "X-RAY DIFFRACTION", "deposit_date": "2022-02-23T00:00:00.000+00:00", "release_date": "2023-05-03T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "HLA-B", "length": 277}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.", "doi": null, "pmid": null, "journal": "Sci Rep", "year": 2023, "authors": ["Huan, X.", "Zhuo, N.", "Lee, H.Y.", "Ren, E.C."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A678ZMW1", "model_count": 1, "models": [{"entryId": "AF-A0A678ZMW1-F1", "uniprotAccession": "A0A678ZMW1", "uniprotDescription": "MHC class I antigen", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 86.31, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A678ZMW1-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A678ZMW1-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A… | 2026-05-27T10:45:01.738414+00:00 | |
| A0A6B7FTL9 | 1 | 1 | 86.12 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A6B7FTL9", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "7SIH", "title": "Crystal Structure of HLA B*3503 in complex with NPDIVIYQY, an 9-mer epitope from HIV-I", "keywords": "IMMUNE SYSTEM", "resolution": 1.9, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-10-14T00:00:00.000+00:00", "release_date": "2022-11-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "MHC class I antigen", "length": 276}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "Molecular insights into the HLA-B35 molecules' classification associated with HIV control.", "doi": null, "pmid": null, "journal": "Immunol Cell Biol", "year": 2024, "authors": ["Lobos, C.A.", "Chatzileontiadou, D.S.", "Sok, B.", "Almedia, C.A.", "Halim, H.", "D'Orsogna, L."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0A6B7FTL9", "model_count": 1, "models": [{"entryId": "AF-A0A6B7FTL9-F1", "uniprotAccession": "A0A6B7FTL9", "uniprotDescription": "MHC class I antigen", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 86.12, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6B7FTL9-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6B7FTL9-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6B7FTL9-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A6B7FTL9", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:01.750587+00:00 | |
| A0A6B7HFJ9 | 3 | 3 | 86.5 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A6B7HFJ9", "pdb_count_total": 3, "pdb_count_detailed": 3, "entries": [{"pdb_id": "6Y26", "title": "Crystal structure of HLA-B2705 complexed with the nona-peptide mA", "keywords": "IMMUNE SYSTEM", "resolution": 1.2, "method": "X-RAY DIFFRACTION", "deposit_date": "2020-02-15T00:00:00.000+00:00", "release_date": "2020-12-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "MHC class I antigen", "length": 276}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "CHLORIDE ION", "chem_id": "CL"}], "primary_citation": {"title": "A CENTRAL PEPTIDE RESIDUE CAN CONTROL\nMHC POLYMORPHISM-DEPENDENT ANTIGEN PRESENTATION", "doi": null, "pmid": null, "journal": "To be published", "year": null, "authors": ["Loll, B.", "Rueckert, C.", "Ziegler, B.-U.", "Ziegler, A."]}, "related_emdb": []}, {"pdb_id": "6Y28", "title": "Crystal structure of HLA-B2705 complexed with the nona-peptide mE", "keywords": "IMMUNE SYSTEM", "resolution": 1.69, "method": "X-RAY DIFFRACTION", "deposit_date": "2020-02-15T00:00:00.000+00:00", "release_date": "2020-12-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "MHC class I antigen", "length": 276}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "A CENTRAL PEPTIDE RESIDUE CAN CONTROL\nMHC POLYMORPHISM-DEPENDENT ANTIGEN PRESENTATION", "doi": null, "pmid": null, "journal": "To be published", "year": null, "authors": ["Loll, B.", "Rueckert, C.", "Ziegler, B.-U.", "Ziegler, A."]}, "related_emdb": []}, {"pdb_id": "6Y2A", "title": "Crystal structure of HLA-B2705 complexed with the nona-peptide mQ", "keywords": "IMMUNE SYSTEM", "resolution": 1.25, "method": "X-RAY DIFFRACTION", "deposit_date": "2020-02-15T00:00:00.000+00:00", "release_date": "2020-12-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "MHC class I antigen", "length": 276}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}], "… | 2026-05-27T10:45:01.741607+00:00 | |
| A0A6I9HGD1 | 6 | 6 | 92.38 | 1 | 6 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A6I9HGD1", "pdb_count_total": 6, "pdb_count_detailed": 6, "entries": [{"pdb_id": "7QJ5", "title": "Structure of recombinant human gamma-Tubulin Ring Complex (spokes 1-14)", "keywords": "CYTOSOLIC PROTEIN", "resolution": 8.7, "method": "ELECTRON MICROSCOPY", "deposit_date": "2021-12-16T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["e"], "description": "actin, cytoplasmic 1", "length": 375}], "ligands": [], "primary_citation": {"title": "Modular assembly of the principal microtubule nucleator gamma-TuRC.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wurtz, M.", "Zupa, E.", "Atorino, E.S.", "Neuner, A.", "Bohler, A.", "Rahadian, A.S."]}, "related_emdb": ["EMD-14010"]}, {"pdb_id": "7QJ7", "title": "Structure of recombinant human gamma-Tubulin Ring Complex 12-spoked assembly intermediate (spokes 1-12 substoichiometric spokes 13-14)", "keywords": "CYTOSOLIC PROTEIN", "resolution": 8.7, "method": "ELECTRON MICROSCOPY", "deposit_date": "2021-12-16T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["e"], "description": "actin, cytoplasmic 1", "length": 375}], "ligands": [], "primary_citation": {"title": "Modular assembly of the principal microtubule nucleator gamma-TuRC.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Wurtz, M.", "Zupa, E.", "Atorino, E.S.", "Neuner, A.", "Bohler, A.", "Rahadian, A.S."]}, "related_emdb": ["EMD-14012"]}, {"pdb_id": "7QJ8", "title": "Structure of recombinant human gamma-Tubulin Ring Complex 12-spoked assembly intermediate (spokes 3-14, substoichiometric spokes 1-2)", "keywords": "CYTOSOLIC PROTEIN", "resolution": 8.7, "method": "ELECTRON MICROSCOPY", "deposit_date": "2021-12-16T00:00:00.000+00:00", "release_date": "2022-01-26T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["e"], "description": "actin, cytoplasmic 1", "length": 37… | 2026-05-27T10:45:01.531810+00:00 | |
| A0A6J0Y1Z7 | 1 | 1 | 89.25 | 1 | 1 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A6J0Y1Z7", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "7QVP", "title": "Human collided disome (di-ribosome) stalled on XBP1 mRNA", "keywords": "TRANSLATION", "resolution": 3.0, "method": "ELECTRON MICROSCOPY", "deposit_date": "2022-01-22T00:00:00.000+00:00", "release_date": "2022-10-12T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "57", "chains": ["RF", "SF"], "description": "40S ribosomal protein S5", "length": 204}], "ligands": [], "primary_citation": {"title": "A distinct mammalian disome collision interface harbors K63-linked polyubiquitination of uS10 to trigger hRQT-mediated subunit dissociation.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Narita, M.", "Denk, T.", "Matsuo, Y.", "Sugiyama, T.", "Kikuguchi, C.", "Ito, S."]}, "related_emdb": ["EMD-14181"]}]}, "alphafold": {"uniprot_id": "A0A6J0Y1Z7", "model_count": 1, "models": [{"entryId": "AF-A0A6J0Y1Z7-F1", "uniprotAccession": "A0A6J0Y1Z7", "uniprotDescription": "Small ribosomal subunit protein uS7", "organismScientificName": "Odocoileus virginianus texanus", "sequenceLength": null, "globalMetricValue": 89.25, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6J0Y1Z7-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6J0Y1Z7-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0A6J0Y1Z7-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0A6J0Y1Z7", "emdb_count": 1, "entries": [{"emdb_id": "EMD-14181", "title": null, "resolution_A": null, "deposit_date": "2022-01-22T00:00:00", "release_date": "2022-10-12T00:00:00", "method": "electron microscopy"}]}} | 2026-05-27T10:45:01.656314+00:00 | |
| A0A6S7XV52 | 6 | 6 | 85.12 | 1 | 1 | 1 | 1 | 0 | {"pdb": {"uniprot_id": "A0A6S7XV52", "pdb_count_total": 6, "pdb_count_detailed": 6, "entries": [{"pdb_id": "7SQP", "title": "Single chain trimer HLA-A*02:01 (Y108C) with HPV.16 E7 peptide YMLDLQPETTDL", "keywords": "IMMUNE SYSTEM", "resolution": 2.53, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-11-05T00:00:00.000+00:00", "release_date": "2022-11-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "C"], "description": "Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera", "length": 427}], "ligands": [], "primary_citation": {"title": "Effects of HLA single chain trimer design on peptide presentation and stability.", "doi": null, "pmid": null, "journal": "Front Immunol", "year": 2023, "authors": ["Finton, K.A.K.", "Rupert, P.B.", "Friend, D.J.", "Dinca, A.", "Lovelace, E.S.", "Buerger, M."]}, "related_emdb": []}, {"pdb_id": "7SR0", "title": "Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPET", "keywords": "IMMUNE SYSTEM", "resolution": 2.54, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-11-07T00:00:00.000+00:00", "release_date": "2022-11-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "C"], "description": "Protein E7 peptide,Beta-2-microglobulin,MHC class I antigen chimera", "length": 424}], "ligands": [{"comp_id": "PHOSPHATE ION", "chem_id": "PO4"}], "primary_citation": {"title": "Effects of HLA single chain trimer design on peptide presentation and stability.", "doi": null, "pmid": null, "journal": "Front Immunol", "year": 2023, "authors": ["Finton, K.A.K.", "Rupert, P.B.", "Friend, D.J.", "Dinca, A.", "Lovelace, E.S.", "Buerger, M."]}, "related_emdb": []}, {"pdb_id": "7SR3", "title": "Single chain trimer HLA-A*02:01 (H98L, Y108C) with HPV.16 E7 peptide YMLDLQPETTDL", "keywords": "IMMUNE SYSTEM", "resolution": 2.49, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-11-07T00:00:00.000+00:00", "release_date": "2022-11-23T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": [… | 2026-05-27T10:45:01.783962+00:00 | |
| A0A9P1NJI6 | 6 | 6 | 0 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0A9P1NJI6", "pdb_count_total": 6, "pdb_count_detailed": 6, "entries": [{"pdb_id": "8BJH", "title": "chimera of the inactive ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, with the double mutation K3528M and K3535I, fused to a proline-Rich-Domain (PRD) and profilin, bound to Latrunculin B-ADP-Mg-actin", "keywords": "TOXIN", "resolution": 1.69, "method": "X-RAY DIFFRACTION", "deposit_date": "2022-11-04T00:00:00.000+00:00", "release_date": "2023-09-20T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["B"], "description": "Putative Adenylate cyclase,Profilin-1", "length": 591}], "ligands": [{"comp_id": "ADENOSINE-5'-DIPHOSPHATE", "chem_id": "ADP"}, {"comp_id": "MAGNESIUM ION", "chem_id": "MG"}, {"comp_id": "LATRUNCULIN B", "chem_id": "LAB"}, {"comp_id": "2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL", "chem_id": "TRS"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "HYDROGEN PEROXIDE", "chem_id": "PEO"}, {"comp_id": "SULFATE ION", "chem_id": "SO4"}, {"comp_id": "DI(HYDROXYETHYL)ETHER", "chem_id": "PEG"}], "primary_citation": {"title": "Functional and structural insights into the multi-step activation and catalytic mechanism of bacterial ExoY nucleotidyl cyclase toxins bound to actin-profilin.", "doi": null, "pmid": null, "journal": "PLoS Pathog", "year": 2023, "authors": ["Teixeira-Nunes, M.", "Retailleau, P.", "Raoux-Barbot, D.", "Comisso, M.", "Missinou, A.A.", "Velours, C."]}, "related_emdb": []}, {"pdb_id": "8BJI", "title": "chimera of ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo fused to a proline-Rich-Domain (PRD) and profilin, bound to ADP-Mg-actin and a sulfate ion", "keywords": "TOXIN", "resolution": 1.75, "method": "X-RAY DIFFRACTION", "deposit_date": "2022-11-04T00:00:00.000+00:00", "release_date": "2023-09-20T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["B"], "description": "Putative Adenylate cyclase,Profilin-1", "length": 591}], "ligands": [{"comp_id": "ADENOSINE-5'-DIPHOSPHATE", "c… | 2026-05-27T10:45:02.454512+00:00 | ||
| A0AVK6 | 1 | 1 | 53.09 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0AVK6", "pdb_count_total": 1, "pdb_count_detailed": 1, "entries": [{"pdb_id": "4YO2", "title": "Structure of E2F8, an atypical member of E2F family of transcription factors", "keywords": "TRANSCRIPTION", "resolution": 3.073, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-03-11T00:00:00.000+00:00", "release_date": "2015-12-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "Transcription factor E2F8", "length": 232}], "ligands": [], "primary_citation": {"title": "Structural insights into the DNA-binding specificity of E2F family transcription factors.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2015, "authors": ["Morgunova, E.", "Yin, Y.", "Jolma, A.", "Dave, K.", "Schmierer, B.", "Popov, A."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0AVK6", "model_count": 1, "models": [{"entryId": "AF-A0AVK6-F1", "uniprotAccession": "A0AVK6", "uniprotDescription": "Transcription factor E2F8", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 53.09, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0AVK6-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0AVK6-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0AVK6-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0AVK6", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:03.013816+00:00 | |
| A0AVT1 | 14 | 14 | 91.44 | 4 | 14 | 1 | 1 | 0 | {"pdb": {"uniprot_id": "A0AVT1", "pdb_count_total": 14, "pdb_count_detailed": 14, "entries": [{"pdb_id": "7PVN", "title": "Crystal Structure of Human UBA6 in Complex with ATP", "keywords": "HYDROLASE", "resolution": 2.71, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-10-05T00:00:00.000+00:00", "release_date": "2022-08-31T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "B"], "description": "Ubiquitin-like modifier-activating enzyme 6", "length": 1052}], "ligands": [{"comp_id": "ADENOSINE-5'-TRIPHOSPHATE", "chem_id": "ATP"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "MAGNESIUM ION", "chem_id": "MG"}, {"comp_id": "CALCIUM ION", "chem_id": "CA"}, {"comp_id": "CHLORIDE ION", "chem_id": "CL"}], "primary_citation": {"title": "Structures of UBA6 explain its dual specificity for ubiquitin and FAT10.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Truongvan, N.", "Li, S.", "Misra, M.", "Kuhn, M.", "Schindelin, H."]}, "related_emdb": []}, {"pdb_id": "7PYV", "title": "Crystal structure of human UBA6 in complex with the ubiquitin-like modifier FAT10", "keywords": "HYDROLASE", "resolution": 3.27, "method": "X-RAY DIFFRACTION", "deposit_date": "2021-10-11T00:00:00.000+00:00", "release_date": "2022-08-24T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "B"], "description": "Ubiquitin-like modifier-activating enzyme 6,Ubiquitin-like modifier-activating enzyme 1,Ubiquitin-like modifier-activating enzyme 6", "length": 1045}], "ligands": [], "primary_citation": {"title": "Structures of UBA6 explain its dual specificity for ubiquitin and FAT10.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2022, "authors": ["Truongvan, N.", "Li, S.", "Misra, M.", "Kuhn, M.", "Schindelin, H."]}, "related_emdb": []}, {"pdb_id": "7SOL", "title": "Crystal Structures of the bispecific ubiquitin/FAT10 activating enzyme, Uba6", "keywords": "SIGNALING PROTEIN/Ligase", "resolution": 2.25000635563, "method": "X-RAY DIFFRACTION", "depo… | 2026-05-27T10:45:01.558156+00:00 | |
| A0FGR8 | 4 | 4 | 73.44 | 5 | 0 | 0 | 1 | 1 | {"pdb": {"uniprot_id": "A0FGR8", "pdb_count_total": 4, "pdb_count_detailed": 4, "entries": [{"pdb_id": "2DMG", "title": "Solution structure of the third C2 domain of KIAA1228 protein", "keywords": "LIPID BINDING PROTEIN", "resolution": null, "method": "SOLUTION NMR", "deposit_date": "2006-04-21T00:00:00.000+00:00", "release_date": "2006-10-21T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "KIAA1228 protein", "length": 142}], "ligands": [], "primary_citation": {"title": "Solution structure of the third C2 domain of KIAA1228 protein", "doi": null, "pmid": null, "journal": "To be published", "year": null, "authors": ["Nagashima, T.", "Hayashi, F.", "Yokoyama, S."]}, "related_emdb": []}, {"pdb_id": "4NPJ", "title": "Extended-Synaptotagmin 2, C2A- and C2B-domains", "keywords": "MEMBRANE PROTEIN", "resolution": 2.101, "method": "X-RAY DIFFRACTION", "deposit_date": "2013-11-21T00:00:00.000+00:00", "release_date": "2014-01-29T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A", "B"], "description": "Extended synaptotagmin-2", "length": 299}], "ligands": [{"comp_id": "CHLORIDE ION", "chem_id": "CL"}, {"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "ACETATE ION", "chem_id": "ACT"}], "primary_citation": {"title": "Structure and ca(2+)-binding properties of the tandem c2 domains of e-syt2.", "doi": null, "pmid": null, "journal": "Structure", "year": 2014, "authors": ["Xu, J.", "Bacaj, T.", "Zhou, A.", "Tomchick, D.R.", "Sudhof, T.C.", "Rizo, J."]}, "related_emdb": []}, {"pdb_id": "4NPK", "title": "Extended-Synaptotagmin 2, C2A- and C2B-domains, calcium bound", "keywords": "MEMBRANE PROTEIN", "resolution": 2.552, "method": "X-RAY DIFFRACTION", "deposit_date": "2013-11-21T00:00:00.000+00:00", "release_date": "2014-01-29T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["A"], "description": "Extended synaptotagmin-2", "length": 299}], "ligands": [{"comp_id": "CALCIUM ION", "chem_id": "CA"}], "primary_citation": {"title": "Stru… | 2026-05-27T10:45:02.153009+00:00 | |
| A0JLT2 | 0 | 0 | 64.81 | 2 | 0 | 0 | 0 | 0 | {"pdb": {}, "alphafold": {"uniprot_id": "A0JLT2", "model_count": 2, "models": [{"entryId": "AF-A0JLT2-F1", "uniprotAccession": "A0JLT2", "uniprotDescription": "Mediator of RNA polymerase II transcription subunit 19", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 64.81, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0JLT2-2-F1", "uniprotAccession": "A0JLT2-2", "uniprotDescription": "Mediator of RNA polymerase II transcription subunit 19", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 67.81, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-2-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-2-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JLT2-2-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0JLT2", "_note": "no PDB data available, cannot derive EMDB"}} | 2026-05-27T10:45:02.316805+00:00 | |
| A0JNW5 | 0 | 0 | 66.75 | 2 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0JNW5", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0JNW5", "model_count": 2, "models": [{"entryId": "AF-A0JNW5-F1", "uniprotAccession": "A0JNW5", "uniprotDescription": "Bridge-like lipid transfer protein family member 3B", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 66.75, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0JNW5-2-F1", "uniprotAccession": "A0JNW5-2", "uniprotDescription": "Bridge-like lipid transfer protein family member 3B", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 80.75, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-2-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-2-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JNW5-2-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0JNW5", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:02.466192+00:00 | |
| A0JP26 | 0 | 0 | 67.81 | 3 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0JP26", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0JP26", "model_count": 3, "models": [{"entryId": "AF-A0JP26-F1", "uniprotAccession": "A0JP26", "uniprotDescription": "POTE ankyrin domain family member B3", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 67.81, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0JP26-3-F1", "uniprotAccession": "A0JP26-3", "uniprotDescription": "POTE ankyrin domain family member B3", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 71.0, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-3-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-3-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-3-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0JP26-2-F1", "uniprotAccession": "A0JP26-2", "uniprotDescription": "POTE ankyrin domain family member B3", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 73.25, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-2-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-2-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0JP26-2-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0JP26", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:02.466400+00:00 | |
| A0N8J3 | 9 | 9 | 91.25 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0N8J3", "pdb_count_total": 9, "pdb_count_detailed": 9, "entries": [{"pdb_id": "4ZAK", "title": "Crystal structure of the mCD1d/DB06-1/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.824, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-04-13T00:00:00.000+00:00", "release_date": "2015-07-01T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T cell antigen receptor beta chain 8.2,T-cell receptor beta-2 chain C region,Protein Trbc2,T-cell receptor beta-2 chain C region", "length": 241}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexaco", "chem_id": "4LX"}], "primary_citation": {"title": "A Novel Glycolipid Antigen for NKT Cells That Preferentially Induces IFN-gamma Production.", "doi": null, "pmid": null, "journal": "J Immunol", "year": 2015, "authors": ["Birkholz, A.M.", "Girardi, E.", "Wingender, G.", "Khurana, A.", "Wang, J.", "Zhao, M."]}, "related_emdb": []}, {"pdb_id": "6MIV", "title": "Crystal structure of the mCD1d/xxq (JJ300)/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.05, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,Tcell receptor chain,T cell receptor beta constant 2", "length": 241}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-({4-O-[(4-tert-butylphenyl)methyl]-alpha-D-galactopyranosyl}oxy)", "chem_id": "JU1"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "aut… | 2026-05-27T10:45:01.584621+00:00 | |
| A0PJK1 | 0 | 0 | 87.88 | 5 | 0 | 0 | 0 | 0 | {"pdb": {"uniprot_id": "A0PJK1", "_error": "Expecting value: line 1 column 1 (char 0)"}, "alphafold": {"uniprot_id": "A0PJK1", "model_count": 5, "models": [{"entryId": "AF-A0PJK1-F1", "uniprotAccession": "A0PJK1", "uniprotDescription": "Sodium/mannose cotransporter SLC5A10", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 87.88, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0PJK1-5-F1", "uniprotAccession": "A0PJK1-5", "uniprotDescription": "Sodium/mannose cotransporter SLC5A10", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 87.06, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-5-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-5-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-5-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0PJK1-4-F1", "uniprotAccession": "A0PJK1-4", "uniprotDescription": "Sodium/mannose cotransporter SLC5A10", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 87.19, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-4-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-4-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0PJK1-4-F1-predicted_aligned_error_v6.png"}, {"entryId": "AF-A0PJK1-3-F1", "uniprotAccession": "A0PJK1-3", "uniprotDescription": "Sodium/mannose cotransporter SLC5A10", "organismScientificName": "Homo sapiens", "sequenceLength": null, "globalMetricValue": 81.12, "modelCreatedDate": "2025-08-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafol… | 2026-05-27T10:45:03.014033+00:00 |
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CREATE TABLE target_layer1_structure ( target_id TEXT PRIMARY KEY, pdb_count_total INTEGER, pdb_count_detailed INTEGER, pdb_best_resolution_A REAL, alphafold_mean_pLDDT REAL, alphafold_model_count INTEGER, emdb_count INTEGER, has_cryoEM INTEGER, -- 0 / 1 has_xray INTEGER, has_NMR INTEGER, raw_json TEXT, recorded_utc TEXT ); CREATE INDEX idx_l1_pdb ON target_layer1_structure(pdb_count_total); CREATE INDEX idx_l1_pLDDT ON target_layer1_structure(alphafold_mean_pLDDT);