target_layer1_structure: A0A5P9VSM6
This data as json
| target_id | pdb_count_total | pdb_count_detailed | pdb_best_resolution_A | alphafold_mean_pLDDT | alphafold_model_count | emdb_count | has_cryoEM | has_xray | has_NMR | raw_json | recorded_utc |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A0A5P9VSM6 | 6 | 6 | 0 | 16 | 1 | 0 | 0 | {"pdb": {"uniprot_id": "A0A5P9VSM6", "pdb_count_total": 6, "pdb_count_detailed": 6, "entries": [{"pdb_id": "8TW6", "title": "TCR in nanodisc ND-II", "keywords": "IMMUNE SYSTEM", "resolution": 3.1, "method": "ELECTRON MICROSCOPY", "deposit_date": "2023-08-20T00:00:00.000+00:00", "release_date": "2024-10-02T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["X", "Y"], "description": "T-cell surface glycoprotein CD3 zeta chain, GFP fusion protein,GFP", "length": 412}], "ligands": [{"comp_id": "CHOLESTEROL", "chem_id": "CLR"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}], "primary_citation": {"title": "The resting and ligand-bound states of the membrane-embedded human T-cell receptor-CD3 complex.", "doi": null, "pmid": null, "journal": "bioRxiv", "year": 2024, "authors": ["Notti, R.Q.", "Yi, F.", "Heissel, S.", "Bush, M.W.", "Molvi, Z.", "Das, P."]}, "related_emdb": ["EMD-41660"]}, {"pdb_id": "8YH0", "title": "A3R-Gi complex bound to NECA", "keywords": "SIGNALING PROTEIN", "resolution": 2.86, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "1", "chains": ["R"], "description": "HA tag,Adenosine receptor A3,LgBiT,eGFP chimera", "length": 794}], "ligands": [{"comp_id": "N-ETHYL-5'-CARBOXAMIDO ADENOSINE", "chem_id": "NEC"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39278", "EMD-61664", "EMD-61666"]}, {"pdb_id": "8YH2", "title": "A3R-Gi complex bound to adenosine", "keywords": "SIGNALING PROTEIN", "resolution": 3.27, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "3", "chains": ["R"], "description": "Hemagglutinin,Adenosine receptor A3,GFP chimera", "length": 794}], "ligands": [{"comp_id": "ADENOSINE", "chem_id": "ADN"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39279", "EMD-61668", "EMD-61670"]}, {"pdb_id": "8YH3", "title": "A3R-Gi complex bound to m6A", "keywords": "SIGNALING PROTEIN", "resolution": 3.4, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["R"], "description": "Hemagglutinin,Adenosine receptor A3,GFP chimera", "length": 794}], "ligands": [{"comp_id": "N-methyladenosine", "chem_id": "6MD"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39280", "EMD-61673", "EMD-61674"]}, {"pdb_id": "8YH5", "title": "A3R-Gi complex bound to i6A", "keywords": "SIGNALING PROTEIN", "resolution": 3.66, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["R"], "description": "Hemagglutinin,Adenosine receptor A3,GFP chimera", "length": 794}], "ligands": [{"comp_id": "N-(3-methylbut-2-en-1-yl)adenosine", "chem_id": "ZIR"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39281", "EMD-61675", "EMD-61676"]}, {"pdb_id": "8YH6", "title": "A3R-Gi complex bound to namodenoson", "keywords": "SIGNALING PROTEIN", "resolution": 3.62, "method": "ELECTRON MICROSCOPY", "deposit_date": "2024-02-27T00:00:00.000+00:00", "release_date": "2024-11-06T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["R"], "description": "Hemagglutinin,Adenosine receptor A3,GFP chimera", "length": 794}], "ligands": [{"comp_id": "namodenoson", "chem_id": "XS0"}], "primary_citation": {"title": "Structural insights into the agonist selectivity of the adenosine A 3 receptor.", "doi": null, "pmid": null, "journal": "Nat Commun", "year": 2024, "authors": ["Oshima, H.S.", "Ogawa, A.", "Sano, F.K.", "Akasaka, H.", "Kawakami, T.", "Iwama, A."]}, "related_emdb": ["EMD-39282", "EMD-61677", "EMD-61678"]}]}, "alphafold": {"uniprot_id": "A0A5P9VSM6", "model_count": 0, "_note": "no AlphaFold prediction"}, "emdb": {"uniprot_id": "A0A5P9VSM6", "emdb_count": 16, "entries": [{"emdb_id": "EMD-41660", "title": null, "resolution_A": null, "deposit_date": "2023-08-20T00:00:00", "release_date": "2024-10-02T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-39278", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-61664", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-27T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-61666", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-39279", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-61668", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-61670", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-39280", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-61673", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-61674", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-39281", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-61675", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-61676", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-39282", "_error": "'list' object has no attribute 'get'"}, {"emdb_id": "EMD-61677", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}, {"emdb_id": "EMD-61678", "title": null, "resolution_A": null, "deposit_date": "2024-09-24T00:00:00", "release_date": "2024-11-06T00:00:00", "method": "electron microscopy"}]}} | 2026-05-27T10:45:02.455383+00:00 |