target_layer1_structure: A0N8J3
This data as json
| target_id | pdb_count_total | pdb_count_detailed | pdb_best_resolution_A | alphafold_mean_pLDDT | alphafold_model_count | emdb_count | has_cryoEM | has_xray | has_NMR | raw_json | recorded_utc |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A0N8J3 | 9 | 9 | 91.25 | 1 | 0 | 0 | 1 | 0 | {"pdb": {"uniprot_id": "A0N8J3", "pdb_count_total": 9, "pdb_count_detailed": 9, "entries": [{"pdb_id": "4ZAK", "title": "Crystal structure of the mCD1d/DB06-1/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.824, "method": "X-RAY DIFFRACTION", "deposit_date": "2015-04-13T00:00:00.000+00:00", "release_date": "2015-07-01T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "4", "chains": ["D"], "description": "T cell antigen receptor beta chain 8.2,T-cell receptor beta-2 chain C region,Protein Trbc2,T-cell receptor beta-2 chain C region", "length": 241}], "ligands": [{"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexaco", "chem_id": "4LX"}], "primary_citation": {"title": "A Novel Glycolipid Antigen for NKT Cells That Preferentially Induces IFN-gamma Production.", "doi": null, "pmid": null, "journal": "J Immunol", "year": 2015, "authors": ["Birkholz, A.M.", "Girardi, E.", "Wingender, G.", "Khurana, A.", "Wang, J.", "Zhao, M."]}, "related_emdb": []}, {"pdb_id": "6MIV", "title": "Crystal structure of the mCD1d/xxq (JJ300)/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.05, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,Tcell receptor chain,T cell receptor beta constant 2", "length": 241}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-({4-O-[(4-tert-butylphenyl)methyl]-alpha-D-galactopyranosyl}oxy)", "chem_id": "JU1"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MIY", "title": "Crystal structure of the mCD1d/xxa (JJ239)/iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.75, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D", "H"], "description": "Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "CHLORIDE ION", "chem_id": "CL"}, {"comp_id": "N-{(2S,3S,4R)-1-[(4-O-benzyl-alpha-D-galactopyranosyl)oxy]-3,4-dihydroxyoctadeca", "chem_id": "JTV"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJ4", "title": "Crystal structure of MCD1D/INKTCR TERNARY COMPLEX bound to glycolipid (XXW)", "keywords": "IMMUNE SYSTEM", "resolution": 2.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-3,4-dihydroxy-1-{[4-O-(prop-2-en-1-yl)-alpha-D-galactopyranosyl]ox", "chem_id": "JTG"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJ6", "title": "Crystal structure of the mCD1d/xxx (JJ166) /iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.45, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-({4-O-[(4-chlorophenyl)methyl]-alpha-D-galactopyranosyl}oxy)-3,4", "chem_id": "JTM"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJA", "title": "Crystal structure of the mCD1d/xxo (JJ294) /iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.35, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-3,4-dihydroxy-1-({4-O-[(4-methylphenyl)methyl]-alpha-D-galactopyra", "chem_id": "JTJ"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJI", "title": "Crystal structure of the mCD1d/xxs (JJ304) /iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 2.3, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-20T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,Tcell receptor chain,T cell receptor beta constant 2", "length": 241}], "ligands": [{"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-{[4-O-(cyclopropylmethyl)-alpha-D-galactopyranosyl]oxy}-3,4-dihy", "chem_id": "JTD"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJJ", "title": "Crystal structure of the mCD1d/xxm (JJ290) /iNKTCR ternary complex", "keywords": "IMMUNE SYSTEM", "resolution": 1.93, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-21T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D"], "description": "Beta-chain,Tcell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-[(2S,3S,4R)-1-({4-O-[(3,4-dichlorophenyl)methyl]-alpha-D-galactopyranosyl}oxy)", "chem_id": "JU4"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}, {"pdb_id": "6MJQ", "title": "Crystal structure of the mCD1d/xxp (JJ295) /iNKTCR ternary complex", "keywords": "immune system/inhibitor", "resolution": 3.0, "method": "X-RAY DIFFRACTION", "deposit_date": "2018-09-21T00:00:00.000+00:00", "release_date": "2019-01-09T00:00:00.000+00:00", "my_uniprot_chains": [{"entity_id": "2", "chains": ["D", "H"], "description": "Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN", "length": 241}], "ligands": [{"comp_id": "GLYCEROL", "chem_id": "GOL"}, {"comp_id": "SODIUM ION", "chem_id": "NA"}, {"comp_id": "2-acetamido-2-deoxy-beta-D-glucopyranose", "chem_id": "NAG"}, {"comp_id": "N-{(2S,3S,4R)-3,4-dihydroxy-1-[(4-O-{[4-(trifluoromethyl)phenyl]methyl}-alpha-D-", "chem_id": "JUD"}], "primary_citation": {"title": "4\"-O-Alkylated alpha-Galactosylceramide Analogues as iNKT-Cell Antigens: Synthetic, Biological, and Structural Studies.", "doi": null, "pmid": null, "journal": "ChemMedChem", "year": 2019, "authors": ["Janssens, J.", "Bitra, A.", "Wang, J.", "Decruy, T.", "Venken, K.", "van der Eycken, J."]}, "related_emdb": []}]}, "alphafold": {"uniprot_id": "A0N8J3", "model_count": 1, "models": [{"entryId": "AF-A0N8J3-F1", "uniprotAccession": "A0N8J3", "uniprotDescription": "Tcell receptor chain", "organismScientificName": "Mus musculus", "sequenceLength": null, "globalMetricValue": 91.25, "modelCreatedDate": "2022-06-01T00:00:00Z", "latestVersion": 6, "cifUrl": "https://alphafold.ebi.ac.uk/files/AF-A0N8J3-F1-model_v6.cif", "pdbUrl": "https://alphafold.ebi.ac.uk/files/AF-A0N8J3-F1-model_v6.pdb", "paeImageUrl": "https://alphafold.ebi.ac.uk/files/AF-A0N8J3-F1-predicted_aligned_error_v6.png"}]}, "emdb": {"uniprot_id": "A0N8J3", "emdb_count": 0, "entries": []}} | 2026-05-27T10:45:01.584621+00:00 |